SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for d5izza_ (5izz A:)

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2144291Fold c.94: Periplasmic binding protein-like II [53849] (1 superfamily)
    consists of two similar intertwined domain with 3 layers (a/b/a) each: duplication
    mixed beta-sheet of 5 strands, order 21354; strand 5 is antiparallel to the rest
  4. 2144292Superfamily c.94.1: Periplasmic binding protein-like II [53850] (4 families) (S)
    Similar in architecture to the superfamily I but partly differs in topology
  5. 2145531Family c.94.1.0: automated matches [191309] (1 protein)
    not a true family
  6. 2145532Protein automated matches [190039] (134 species)
    not a true protein
  7. 2285237Species Uncultured bacterium [TaxId:77133] [328538] (2 PDB entries)
  8. 2285238Domain d5izza_: 5izz A: [328539]
    automated match to d5im2a_
    complexed with 3hp, peg; mutant

Details for d5izza_

PDB Entry: 5izz (more details), 1.6 Å

PDB Description: crystal structure of a marine metagenome trap solute binding protein specific for aromatic acid ligands (sorcerer ii global ocean sampling expedition, unidentified microbe, locus tag gos_1523157, triple surface mutant k158a_k223a_k313a) in complex with metahydroxyphenylacetate, thermal exchange of ligand
PDB Compounds: (A:) trap transporter solute binding protein

SCOPe Domain Sequences for d5izza_:

Sequence; same for both SEQRES and ATOM records: (download)

>d5izza_ c.94.1.0 (A:) automated matches {Uncultured bacterium [TaxId: 77133]}
evvlkfhsfppmpansnakfvkpwsekvlaesngeikveiypamqlggkppqlvdqvrdg
vvdivwtvagytpgrfphleafelpfmpasaeatsqalqeyvdtvaasdlkdykvlavfc
hapgkihtkekviasaadlngmkmrgptrvitkmleglgatpvgmpvpavagalskgvid
gmvvpweimpsfklheltaahttvsgsrglyttpflflmnkakyeslsdehkkvidnnag
lalaklagqlwdgfevparklaldaggtihslsggplaemkaagegleadwiksandrgl
dgamlvktakdliskydk

SCOPe Domain Coordinates for d5izza_:

Click to download the PDB-style file with coordinates for d5izza_.
(The format of our PDB-style files is described here.)

Timeline for d5izza_:

  • d5izza_ appears in periodic updates to SCOPe 2.06 starting on 2017-01-19