SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for d5hk0b_ (5hk0 B:)

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2045654Fold b.34: SH3-like barrel [50036] (21 superfamilies)
    barrel, partly opened; n*=4, S*=8; meander
    the last strand is interrupted by a turn of 3-10 helix
  4. 2046974Superfamily b.34.6: Cell growth inhibitor/plasmid maintenance toxic component [50118] (4 families) (S)
    contains insert beta-sheet subdomain and C-terminal helix
  5. 2285221Family b.34.6.0: automated matches [328522] (1 protein)
    not a true family
  6. 2285222Protein automated matches [328523] (1 species)
    not a true protein
  7. 2285223Species Mycobacterium tuberculosis [TaxId:83332] [328524] (3 PDB entries)
  8. 2285224Domain d5hk0b_: 5hk0 B: [328525]
    automated match to d4of1a_
    protein/RNA complex

Details for d5hk0b_

PDB Entry: 5hk0 (more details), 2.25 Å

PDB Description: crystal structure of m. tuberculosis mazf-mt3 (rv1991c) in complex with rna
PDB Compounds: (B:) Endoribonuclease MazF6

SCOPe Domain Sequences for d5hk0b_:

Sequence, based on SEQRES records: (download)

>d5hk0b_ b.34.6.0 (B:) automated matches {Mycobacterium tuberculosis [TaxId: 83332]}
mvisraeiywadlgppsgsqpakrrpvlviqsdpynasrlatviaavitsntalaampgn
vflpatttrlprdsvvnvtaivtlnktdltdrvgevpaslmhevdrglrrvldl

Sequence, based on observed residues (ATOM records): (download)

>d5hk0b_ b.34.6.0 (B:) automated matches {Mycobacterium tuberculosis [TaxId: 83332]}
mvisraeiywadlpakrrpvlviqsdpynasrlatviaavitsntalaampgnvflpatt
trlprdsvvnvtaivtlnktdltdrvgevpaslmhevdrglrrvldl

SCOPe Domain Coordinates for d5hk0b_:

Click to download the PDB-style file with coordinates for d5hk0b_.
(The format of our PDB-style files is described here.)

Timeline for d5hk0b_:

  • d5hk0b_ appears in periodic updates to SCOPe 2.06 starting on 2017-01-19