SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Species: Soil metagenome [TaxId: 410658]

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2078560Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. 2081496Superfamily c.1.8: (Trans)glycosidases [51445] (15 families) (S)
  5. 2083716Family c.1.8.0: automated matches [191314] (1 protein)
    not a true family
  6. 2083717Protein automated matches [190075] (87 species)
    not a true protein
  7. 2285205Species Soil metagenome [TaxId:410658] [328506] (1 PDB entry)

PDB entry in Species: Soil metagenome [TaxId: 410658]:

More info for Species Soil metagenome [TaxId:410658] from c.1.8.0 automated matches

Timeline for Species Soil metagenome [TaxId:410658] from c.1.8.0 automated matches:

  • Species Soil metagenome [TaxId:410658] from c.1.8.0 automated matches appears in periodic updates to SCOPe 2.06 starting on 2017-01-18