SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Species: Human herpesvirus 8 [TaxId: 37296]

  1. Root: SCOPe 2.06
  2. 2152203Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2190102Fold d.117: Thymidylate synthase/dCMP hydroxymethylase [55830] (1 superfamily)
    contains large mixed beta-sheet
  4. 2190103Superfamily d.117.1: Thymidylate synthase/dCMP hydroxymethylase [55831] (2 families) (S)
    automatically mapped to Pfam PF00303
  5. 2190104Family d.117.1.1: Thymidylate synthase/dCMP hydroxymethylase [55832] (4 protein domains)
  6. 2190399Protein automated matches [190469] (14 species)
    not a true protein
  7. 2285170Species Human herpesvirus 8 [TaxId:37296] [328471] (3 PDB entries)

PDB entries in Species: Human herpesvirus 8 [TaxId: 37296]:

  1. Domain(s) for 5h38:
    1. 2285230Domain d5h38a_: 5h38 A: [328531]
      automated match to d1hvya_
      complexed with po4
    2. 2285340Domain d5h38b_: 5h38 B: [328641]
      automated match to d1hvya_
      complexed with po4
  2. Domain(s) for 5h39:
    1. 2285171Domain d5h39a_: 5h39 A: [328472]
      automated match to d1hvya_
      complexed with ump
    2. 2285229Domain d5h39b_: 5h39 B: [328530]
      automated match to d1hvya_
      complexed with ump
  3. Domain(s) for 5h3a:
    1. 2285192Domain d5h3ab_: 5h3a B: [328493]
      automated match to d1hvya_
      complexed with d16, ump
    2. 2285323Domain d5h3aa_: 5h3a A: [328624]
      automated match to d1hvya_
      complexed with d16, ump

More info for Species Human herpesvirus 8 [TaxId:37296] from d.117.1.1 automated matches

Timeline for Species Human herpesvirus 8 [TaxId:37296] from d.117.1.1 automated matches:

  • Species Human herpesvirus 8 [TaxId:37296] from d.117.1.1 automated matches appears in periodic updates to SCOPe 2.06 starting on 2017-01-18