SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for d5fygb_ (5fyg B:)

  1. Root: SCOPe 2.06
  2. 1976409Class a: All alpha proteins [46456] (289 folds)
  3. 2004931Fold a.104: Cytochrome P450 [48263] (1 superfamily)
    multihelical
  4. 2004932Superfamily a.104.1: Cytochrome P450 [48264] (2 families) (S)
  5. 2005528Family a.104.1.0: automated matches [191509] (1 protein)
    not a true family
  6. 2005529Protein automated matches [190847] (59 species)
    not a true protein
  7. 2285155Species Marinobacter hydrocarbonoclasticus [TaxId:2743] [328456] (2 PDB entries)
  8. 2285168Domain d5fygb_: 5fyg B: [328469]
    automated match to d4pwva_
    complexed with 12h, hem

Details for d5fygb_

PDB Entry: 5fyg (more details), 2.22 Å

PDB Description: structure of cyp153a from marinobacter aquaeolei in complex with hydroxydodecanoic acid
PDB Compounds: (B:) cytochrome p450

SCOPe Domain Sequences for d5fygb_:

Sequence; same for both SEQRES and ATOM records: (download)

>d5fygb_ a.104.1.0 (B:) automated matches {Marinobacter hydrocarbonoclasticus [TaxId: 2743]}
fvetpipdvntlaledidvsnpflyrqgqwrayfkrlrdeapvhyqknspfgpfwsvtrf
edilfvdkshdlfsaepqiilgdppeglsvemfiamdppkhdvqrssvqgvvapknlkem
eglirsrtgdvldslptdkpfnwvpavskeltgrmlatlldfpyeerhklvewsdrmaga
asatggefadenamfddaadmarsfsrlwrdkearraageepgfdlisllqsnketkdli
nrpmefignltllivggndttrnsmsgglvamnefprefeklkakpelipnmvseiirwq
tplaymrriakqdvelggqtikkgdrvvmwyasgnrderkfdnpdqfiidrkdarnhmsf
gygvhrcmgnrlaelqlrilweeilkrfdnievveepervqsnfvrgysrlmvkltpns

SCOPe Domain Coordinates for d5fygb_:

Click to download the PDB-style file with coordinates for d5fygb_.
(The format of our PDB-style files is described here.)

Timeline for d5fygb_:

  • d5fygb_ appears in periodic updates to SCOPe 2.06 starting on 2017-01-18