SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for d5cknd2 (5ckn D:120-164)

  1. Root: SCOPe 2.06
  2. 2229111Class g: Small proteins [56992] (94 folds)
  3. 2229389Fold g.3: Knottins (small inhibitors, toxins, lectins) [57015] (19 superfamilies)
    disulfide-bound fold; contains beta-hairpin with two adjacent disulfides
  4. 2230373Superfamily g.3.11: EGF/Laminin [57196] (8 families) (S)
  5. 2230991Family g.3.11.0: automated matches [227227] (1 protein)
    not a true family
  6. 2230992Protein automated matches [226968] (3 species)
    not a true protein
  7. 2231039Species Norway rat (Rattus norvegicus) [TaxId:10116] [270149] (4 PDB entries)
  8. 2285147Domain d5cknd2: 5ckn D:120-164 [328448]
    Other proteins in same PDB: d5ckna1, d5ckna3, d5cknd1, d5cknd3
    automated match to d1nt0a3
    complexed with ca

Details for d5cknd2

PDB Entry: 5ckn (more details), 2.6 Å

PDB Description: the cub1-egf-cub2 domains of rat mbl-associated serine protease-2 (masp-2) bound to ca2+
PDB Compounds: (D:) Mannan-binding lectin serine peptidase 2

SCOPe Domain Sequences for d5cknd2:

Sequence; same for both SEQRES and ATOM records: (download)

>d5cknd2 g.3.11.0 (D:120-164) automated matches {Norway rat (Rattus norvegicus) [TaxId: 10116]}
vdecrtslgdsvpcdhychnylggyycscrvgyilhqnkhtcsal

SCOPe Domain Coordinates for d5cknd2:

Click to download the PDB-style file with coordinates for d5cknd2.
(The format of our PDB-style files is described here.)

Timeline for d5cknd2:

  • d5cknd2 appears in periodic updates to SCOPe 2.06 starting on 2017-01-18