SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Species: Rattus norvegicus [TaxId: 10116]

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2041738Fold b.23: CUB-like [49853] (3 superfamilies)
    sandwich, 10 strands in 2 sheets; jelly-roll
  4. 2041739Superfamily b.23.1: Spermadhesin, CUB domain [49854] (2 families) (S)
    automatically mapped to Pfam PF00431
  5. 2041740Family b.23.1.1: Spermadhesin, CUB domain [49855] (6 protein domains)
  6. 2285141Protein automated matches [328442] (1 species)
    not a true protein
  7. 2285142Species Rattus norvegicus [TaxId:10116] [328443] (3 PDB entries)

PDB entries in Species: Rattus norvegicus [TaxId: 10116]:

  1. Domain(s) for 5cis:
    1. 2285173Domain d5cisa1: 5cis A:2-119 [328474]
      Other proteins in same PDB: d5cisa2
      automated match to d1nt0a1
      complexed with ca, nag
    2. 2285175Domain d5cisa3: 5cis A:165-279 [328476]
      Other proteins in same PDB: d5cisa2
      automated match to d1nt0a2
      complexed with ca, nag
  2. Domain(s) for 5ckm:
    1. 2285150Domain d5ckma1: 5ckm A:2-119 [328451]
      Other proteins in same PDB: d5ckma2
      automated match to d1nt0a1
      complexed with ca, nag
    2. 2285152Domain d5ckma3: 5ckm A:165-278 [328453]
      Other proteins in same PDB: d5ckma2
      automated match to d1nt0a2
      complexed with ca, nag
  3. Domain(s) for 5ckn:
    1. 2285145Domain d5cknd1: 5ckn D:1-119 [328446]
      Other proteins in same PDB: d5ckna2, d5cknd2
      automated match to d1nt0a1
      complexed with ca
    2. 2285149Domain d5cknd3: 5ckn D:165-278 [328450]
      Other proteins in same PDB: d5ckna2, d5cknd2
      automated match to d1nt0a2
      complexed with ca
    3. 2285208Domain d5ckna1: 5ckn A:1-119 [328509]
      Other proteins in same PDB: d5ckna2, d5cknd2
      automated match to d1nt0a1
      complexed with ca
    4. 2285210Domain d5ckna3: 5ckn A:165-278 [328511]
      Other proteins in same PDB: d5ckna2, d5cknd2
      automated match to d1nt0a2
      complexed with ca

More info for Species Rattus norvegicus [TaxId:10116] from b.23.1.1 automated matches

Timeline for Species Rattus norvegicus [TaxId:10116] from b.23.1.1 automated matches:

  • Species Rattus norvegicus [TaxId:10116] from b.23.1.1 automated matches appears in periodic updates to SCOPe 2.06 starting on 2017-01-18