SCOPe 2.08: Domain d5m1cb1: 5m1c B:7-325

Lineage for d5m1cb1 (5m1c B:7-325)

1. Root: SCOPe 2.08

2. Class b: All beta proteins [48724] (180 folds)

3. Fold b.45: Split barrel-like [50474] (3 superfamilies)
   barrel; n=6, S=10; greek-key

4. Superfamily b.45.1: FMN-binding split barrel [50475] (5 families)
   related to the ferredoxin reductase-like FAD-binding domain

5. Family b.45.1.3: UbiD middle domain-like [141368] (2 proteins)
   N terminal part of Pfam PF01977; overall structural similarity to one subunit of the NADH:FMN oxidoreductase-like family (50482); not known to bind a flavin cofactor; also includes the N-terminal alpha+beta subdomain (~110 residues)

6. Protein automated matches [327997] (2 species)
   not a true protein

7. Species Escherichia coli [TaxId:199310] [328004] (3 PDB entries)

8. Domain d5m1cb1: 5m1c B:7-325 [328117]
   Other proteins in same PDB: d5m1ca2, d5m1cb2, d5m1cc2
   automated match to d2idba1
   complexed with pg4

Details for d5m1cb1

PDB Entry: 5m1c, 2.75 Å

PDB Description: crystal structure of n-terminally tagged apo-ubid from e. coli

PDB Compounds: (B:) 3-octaprenyl-4-hydroxybenzoate carboxy-lyase

SCOPe Domain Sequences for d5m1cb1:

Sequence, based on SEQRES records:

>d5m1cb1 b.45.1.3 (B:7-325) automated matches {Escherichia coli [TaxId: 199310]}
ndlrdfltlleqqgelkritlpvdphleiteiadrtlraggpallfenpkgysmpvlcnl
fgtpkrvamgmgqedvsalrevgkllaflkepeppkgfrdlfdklpqfkqvlnmptkrlr
gapcqqkivsgddvdlnripimtcwpedaaplitwgltvtrgphkerqnlgiyrqqligk
nklimrwlshrggaldyqewcaahpgerfpvsvalgadpatilgavtpvpdtlseyafag
llrgtktevvkcisndlevpasaeivlegyieqgetapegpygdhtgyynevdsfpvftv
thitqredaiyhstytgrp

Sequence, based on observed residues (ATOM records):

>d5m1cb1 b.45.1.3 (B:7-325) automated matches {Escherichia coli [TaxId: 199310]}
ndlrdfltlleqqgelkritlpvdphleiteiadrtlraggpallfenpkgysmpvlcnl
fgtpkrvamgmgqedvsalrevgkllaflkptkrlrgapcqqkivsgddvdlnripimtc
wpedaaplitwgltvtrgphkerqnlgiyrqqligknklimrwlshrggaldyqewcaah
pgerfpvsvalgadpatilgavtpvpdtlseyafagllrgtktevvkcisndlevpasae
ivlegyieqgetapegpygdhtgyynevdsfpvftvthitqredaiyhstytgrp

Timeline for d5m1cb1:

• d5m1cb1 first appeared in SCOPe 2.06
  
• d5m1cb1 appears in SCOPe 2.07