SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for d5mcjb_ (5mcj B:)

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2042196Fold b.29: Concanavalin A-like lectins/glucanases [49898] (1 superfamily)
    sandwich; 12-14 strands in 2 sheets; complex topology
  4. 2042197Superfamily b.29.1: Concanavalin A-like lectins/glucanases [49899] (26 families) (S)
  5. 2044115Family b.29.1.0: automated matches [191363] (1 protein)
    not a true family
  6. 2044116Protein automated matches [190437] (51 species)
    not a true protein
  7. 2268332Species Daphnia pulex [TaxId:6669] [311638] (12 PDB entries)
  8. 2284775Domain d5mcjb_: 5mcj B: [328076]
    automated match to d4xnnb_
    complexed with gol, so4

Details for d5mcjb_

PDB Entry: 5mcj (more details), 2 Å

PDB Description: radiation damage to gh7 family cellobiohydrolase from daphnia pulex: dose (dwd) 14.1 mgy
PDB Compounds: (B:) Cellobiohydrolase CHBI

SCOPe Domain Sequences for d5mcjb_:

Sequence, based on SEQRES records: (download)

>d5mcjb_ b.29.1.0 (B:) automated matches {Daphnia pulex [TaxId: 6669]}
envgtqaaeeplnlpisvctapgncqteadavvldsnwrwahtttgytncytgnlwdttl
cptpetcttncaidgvpladwsgtyggsvtgnkfnlkfvtvgpystnigartflldstkt
ryrmfqllnreftydvdvssldcglngalyfvsmdadggaakyptnkggakygtgycdaq
cphdvkwinglanskdwtpipgdansgkgyygnccaeldiweankqsqaftthpctpndq
trcegvvcgdndsgdryngmcdkdgcdfasyrmndhtfygpgstfkldstkpftvvsqfi
ttdgtdngdfkefrrfyvqngvrienskvnfpgitaydsitdemcaatkglfgdlddhkn
kggmkqmgeamrkgmalvmsiwddhdvnmlwldsnypptgnpstpgvargpcpttsgvps
evevtqanavvsfgnikfgpigstv

Sequence, based on observed residues (ATOM records): (download)

>d5mcjb_ b.29.1.0 (B:) automated matches {Daphnia pulex [TaxId: 6669]}
envgtqaaeeplnlpisvctapgncqteadavvldsnwrwahtttgytncytgnlwdttl
cptpetcttncaidgvpladwsgtyggsvtgnkfnlkfvtvtnigartflldstktryrm
fqllnreftydvdvssldcglngalyfvsmdadggaakyptnkggakygtgycdaqcphd
vkwinglanskdwtpipgdansgkgyygnccaeldiweankqsqaftthpctpndqtrce
gvvcgdndsgdryngmcdkdgcdfasyrmndhtfygpgstfkldstkpftvvsqfittdg
tdngdfkefrrfyvqngvrienskvnfpgitaydsitdemcaatkglfgdlddhknkggm
kqmgeamrkgmalvmsiwddhdvnmlwldsnypptgnpstpgvargpcpttsgvpsevev
tqanavvsfgnikfgpigstv

SCOPe Domain Coordinates for d5mcjb_:

Click to download the PDB-style file with coordinates for d5mcjb_.
(The format of our PDB-style files is described here.)

Timeline for d5mcjb_:

  • d5mcjb_ appears in periodic updates to SCOPe 2.06 starting on 2017-01-12