SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for d5m2va_ (5m2v A:)

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2144291Fold c.94: Periplasmic binding protein-like II [53849] (1 superfamily)
    consists of two similar intertwined domain with 3 layers (a/b/a) each: duplication
    mixed beta-sheet of 5 strands, order 21354; strand 5 is antiparallel to the rest
  4. 2144292Superfamily c.94.1: Periplasmic binding protein-like II [53850] (4 families) (S)
    Similar in architecture to the superfamily I but partly differs in topology
  5. 2145531Family c.94.1.0: automated matches [191309] (1 protein)
    not a true family
  6. 2145532Protein automated matches [190039] (136 species)
    not a true protein
  7. 2145930Species Norway rat (Rattus norvegicus) [TaxId:10116] [186759] (90 PDB entries)
  8. 2284707Domain d5m2va_: 5m2v A: [328008]
    automated match to d4mf3a_
    complexed with 7e5, cl, so4

Details for d5m2va_

PDB Entry: 5m2v (more details), 3.18 Å

PDB Description: structure of gluk1 ligand-binding domain (s1s2) in complex with (2s, 4r)-4-(2-carboxyphenoxy)pyrrolidine-2-carboxylic acid at 3.18 a resolution
PDB Compounds: (A:) Glutamate receptor ionotropic, kainate 1,Glutamate receptor ionotropic, kainate 1

SCOPe Domain Sequences for d5m2va_:

Sequence, based on SEQRES records: (download)

>d5m2va_ c.94.1.0 (A:) automated matches {Norway rat (Rattus norvegicus) [TaxId: 10116]}
tlivttileepyvmyrksdkplygndrfegycldllkelsnilgflydvklvpdgkygaq
ndkgewngmvkelidhradlavapltityvrekvidfskpfmtlgisilyrkgtpidsad
dlakqtkieygavrdgstmtffkkskistyekmwafmssrqqsalvknsdegiqrvlttd
yallmestsieyvtqrncnltqigglidskgygvgtpigspyrdkitiailqlqeegklh
mmkekwwrgngcp

Sequence, based on observed residues (ATOM records): (download)

>d5m2va_ c.94.1.0 (A:) automated matches {Norway rat (Rattus norvegicus) [TaxId: 10116]}
tlivttileepyvmyrksdkplygndrfegycldllkelsnilgflydvklvpdgkygaq
ndkgewngmvkelidhradlavapltityvrekvidfskpfmtlgisilyrkgtpidsad
dlakqtkieygavrdgstmtffkkskistyekmwafmssrqqsalvknsdegiqrvlttd
yallmestsieyvtqrncnltqigglidskgygvgtpigspyrdkitiailqlqeegklh
mmkekwwrgcp

SCOPe Domain Coordinates for d5m2va_:

Click to download the PDB-style file with coordinates for d5m2va_.
(The format of our PDB-style files is described here.)

Timeline for d5m2va_:

  • d5m2va_ appears in periodic updates to SCOPe 2.06 starting on 2017-01-12