SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Species: Escherichia coli [TaxId: 199310]

  1. Root: SCOPe 2.06
  2. 2152203Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2216573Fold d.333: UbiD C-terminal domain-like [143967] (1 superfamily)
    alpha-beta(2)-alpha-beta-alpha-beta(2); 3 layers, a/b/a; mixed beta-sheet, order: 12354, strands 2,3 and 5 are parallel to each other
  4. 2216574Superfamily d.333.1: UbiD C-terminal domain-like [143968] (2 families) (S)
  5. 2284699Family d.333.1.0: automated matches [328000] (1 protein)
    not a true family
  6. 2284700Protein automated matches [328001] (2 species)
    not a true protein
  7. 2284705Species Escherichia coli [TaxId:199310] [328006] (3 PDB entries)

PDB entries in Species: Escherichia coli [TaxId: 199310]:

  1. Domain(s) for 5m1b:
    1. 2284725Domain d5m1bc2: 5m1b C:326-491 [328026]
      Other proteins in same PDB: d5m1ba1, d5m1bb1, d5m1bc1
      automated match to d2idba2
    2. 2284828Domain d5m1bb2: 5m1b B:326-490 [328129]
      Other proteins in same PDB: d5m1ba1, d5m1bb1, d5m1bc1
      automated match to d2idba2
    3. 2284856Domain d5m1ba2: 5m1b A:326-491 [328157]
      Other proteins in same PDB: d5m1ba1, d5m1bb1, d5m1bc1
      automated match to d2idba2
  2. Domain(s) for 5m1c:
    1. 2284706Domain d5m1cc2: 5m1c C:326-491 [328007]
      Other proteins in same PDB: d5m1ca1, d5m1cb1, d5m1cc1
      automated match to d2idba2
      complexed with pg4
    2. 2284781Domain d5m1ca2: 5m1c A:326-491 [328082]
      Other proteins in same PDB: d5m1ca1, d5m1cb1, d5m1cc1
      automated match to d2idba2
      complexed with pg4
    3. 2284817Domain d5m1cb2: 5m1c B:326-490 [328118]
      Other proteins in same PDB: d5m1ca1, d5m1cb1, d5m1cc1
      automated match to d2idba2
      complexed with pg4
  3. Domain(s) for 5m1e:
    1. 2284763Domain d5m1ec2: 5m1e C:326-491 [328064]
      Other proteins in same PDB: d5m1ea1, d5m1eb1, d5m1ec1
      automated match to d2idba2
      complexed with 7d9, mn, na
    2. 2284790Domain d5m1ea2: 5m1e A:326-492 [328091]
      Other proteins in same PDB: d5m1ea1, d5m1eb1, d5m1ec1
      automated match to d2idba2
      complexed with 7d9, mn, na
    3. 2284810Domain d5m1eb2: 5m1e B:326-491 [328111]
      Other proteins in same PDB: d5m1ea1, d5m1eb1, d5m1ec1
      automated match to d2idba2
      complexed with 7d9, mn, na

More info for Species Escherichia coli [TaxId:199310] from d.333.1.0 automated matches

Timeline for Species Escherichia coli [TaxId:199310] from d.333.1.0 automated matches:

  • Species Escherichia coli [TaxId:199310] from d.333.1.0 automated matches appears in periodic updates to SCOPe 2.06 starting on 2017-01-12