SCOPe 2.06: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.06
Class b: All beta proteins [48724] (177 folds)
Fold b.45: Split barrel-like [50474] (3 superfamilies)
barrel; n=6, S=10; greek-key
Superfamily b.45.1: FMN-binding split barrel [50475] (5 families)
related to the ferredoxin reductase-like FAD-binding domain

Family b.45.1.3: UbiD middle domain-like [141368] (2 proteins)
N terminal part of Pfam PF01977; overall structural similarity to one subunit of the NADH:FMN oxidoreductase-like family (50482); not known to bind a flavin cofactor; also includes the N-terminal alpha+beta subdomain (~110 residues)

Protein automated matches [327997] (2 species)
not a true protein

Species:

Escherichia coli [TaxId:199310] [328004] (3 PDB entries)
1. Domains for 5m1b:
  1. Domain d5m1ba1: 5m1b A:8-325 [328156]
    Other proteins in same PDB: d5m1ba2, d5m1bb2, d5m1bc2
    automated match to d2idba1
  2. Domain d5m1bb1: 5m1b B:6-325 [328128]
    Other proteins in same PDB: d5m1ba2, d5m1bb2, d5m1bc2
    automated match to d2idba1
  3. Domain d5m1bc1: 5m1b C:7-325 [328025]
    Other proteins in same PDB: d5m1ba2, d5m1bb2, d5m1bc2
    automated match to d2idba1
2. Domains for 5m1c:
  1. Domain d5m1ca1: 5m1c A:8-325 [328081]
    Other proteins in same PDB: d5m1ca2, d5m1cb2, d5m1cc2
    automated match to d2idba1
    complexed with pg4
  2. Domain d5m1cb1: 5m1c B:7-325 [328117]
    Other proteins in same PDB: d5m1ca2, d5m1cb2, d5m1cc2
    automated match to d2idba1
    complexed with pg4
  3. Domain d5m1cc1: 5m1c C:7-325 [328005]
    Other proteins in same PDB: d5m1ca2, d5m1cb2, d5m1cc2
    automated match to d2idba1
    complexed with pg4
3. Domains for 5m1e:
  1. Domain d5m1ea1: 5m1e A:6-325 [328090]
    Other proteins in same PDB: d5m1ea2, d5m1eb2, d5m1ec2
    automated match to d2idba1
    complexed with 7d9, mn, na
  2. Domain d5m1eb1: 5m1e B:6-325 [328110]
    Other proteins in same PDB: d5m1ea2, d5m1eb2, d5m1ec2
    automated match to d2idba1
    complexed with 7d9, mn, na
  3. Domain d5m1ec1: 5m1e C:7-325 [328063]
    Other proteins in same PDB: d5m1ea2, d5m1eb2, d5m1ec2
    automated match to d2idba1
    complexed with 7d9, mn, na
Escherichia coli [TaxId:562] [327998] (1 PDB entry)
- Domains for 5m1d:
  1. Domain d5m1da1: 5m1d A:6-325 [327999]
    Other proteins in same PDB: d5m1da2, d5m1db2, d5m1dc2
    automated match to d2idba1
    complexed with 4lu, mn, na, so4
  2. Domain d5m1db1: 5m1d B:6-325 [328055]
    Other proteins in same PDB: d5m1da2, d5m1db2, d5m1dc2
    automated match to d2idba1
    complexed with 4lu, mn, na, so4
  3. Domain d5m1dc1: 5m1d C:7-325 [328043]
    Other proteins in same PDB: d5m1da2, d5m1db2, d5m1dc2
    automated match to d2idba1
    complexed with 4lu, mn, na, so4

More info for Protein automated matches from b.45.1.3: UbiD middle domain-like

Timeline for Protein automated matches from b.45.1.3: UbiD middle domain-like:

Protein automated matches from b.45.1.3: UbiD middle domain-like is new in SCOPe 2.06-stable
Protein automated matches from b.45.1.3: UbiD middle domain-like appears in SCOPe 2.07
Protein automated matches from b.45.1.3: UbiD middle domain-like appears in the current release, SCOPe 2.08