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Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2055232Fold b.45: Split barrel-like [50474] (3 superfamilies)
    barrel; n=6, S=10; greek-key
  4. 2055233Superfamily b.45.1: FMN-binding split barrel [50475] (5 families) (S)
    related to the ferredoxin reductase-like FAD-binding domain
  5. 2055414Family b.45.1.3: UbiD middle domain-like [141368] (2 protein domains)
    N terminal part of Pfam PF01977; overall structural similarity to one subunit of the NADH:FMN oxidoreductase-like family (50482); not known to bind a flavin cofactor; also includes the N-terminal alpha+beta subdomain (~110 residues)
  6. 2284696Protein automated matches [327997] (2 species)
    not a true protein

Species:

  1. 2284697Escherichia coli [TaxId:562] [327998] (1 PDB entry)
  2. 2284703Escherichia coli [TaxId:199310] [328004] (3 PDB entries)
    1. Domains for 5m1b:
      1. 2284724Domain d5m1bc1: 5m1b C:7-325 [328025]
        Other proteins in same PDB: d5m1ba2, d5m1bb2, d5m1bc2
        automated match to d2idba1
      2. 2284827Domain d5m1bb1: 5m1b B:6-325 [328128]
        Other proteins in same PDB: d5m1ba2, d5m1bb2, d5m1bc2
        automated match to d2idba1
      3. 2284855Domain d5m1ba1: 5m1b A:8-325 [328156]
        Other proteins in same PDB: d5m1ba2, d5m1bb2, d5m1bc2
        automated match to d2idba1
    2. Domains for 5m1c:
      1. 2284704Domain d5m1cc1: 5m1c C:7-325 [328005]
        Other proteins in same PDB: d5m1ca2, d5m1cb2, d5m1cc2
        automated match to d2idba1
        complexed with pg4
      2. 2284780Domain d5m1ca1: 5m1c A:8-325 [328081]
        Other proteins in same PDB: d5m1ca2, d5m1cb2, d5m1cc2
        automated match to d2idba1
        complexed with pg4
      3. 2284816Domain d5m1cb1: 5m1c B:7-325 [328117]
        Other proteins in same PDB: d5m1ca2, d5m1cb2, d5m1cc2
        automated match to d2idba1
        complexed with pg4
    3. Domains for 5m1e:
      1. 2284762Domain d5m1ec1: 5m1e C:7-325 [328063]
        Other proteins in same PDB: d5m1ea2, d5m1eb2, d5m1ec2
        automated match to d2idba1
        complexed with 7d9, mn, na
      2. 2284789Domain d5m1ea1: 5m1e A:6-325 [328090]
        Other proteins in same PDB: d5m1ea2, d5m1eb2, d5m1ec2
        automated match to d2idba1
        complexed with 7d9, mn, na
      3. 2284809Domain d5m1eb1: 5m1e B:6-325 [328110]
        Other proteins in same PDB: d5m1ea2, d5m1eb2, d5m1ec2
        automated match to d2idba1
        complexed with 7d9, mn, na

More info for Protein automated matches from b.45.1.3: UbiD middle domain-like

Timeline for Protein automated matches from b.45.1.3: UbiD middle domain-like:

  • Protein automated matches from b.45.1.3: UbiD middle domain-like appears in periodic updates to SCOPe 2.06 starting on 2017-01-12