SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for d5kyoa_ (5kyo A:)

  1. Root: SCOPe 2.06
  2. 1976409Class a: All alpha proteins [46456] (289 folds)
  3. 2004931Fold a.104: Cytochrome P450 [48263] (1 superfamily)
    multihelical
  4. 2004932Superfamily a.104.1: Cytochrome P450 [48264] (2 families) (S)
  5. 2005528Family a.104.1.0: automated matches [191509] (1 protein)
    not a true family
  6. 2005529Protein automated matches [190847] (58 species)
    not a true protein
  7. 2284534Species Sphingobium yanoikuyae [TaxId:13690] [327835] (1 PDB entry)
  8. 2284579Domain d5kyoa_: 5kyo A: [327880]
    automated match to d4dxya_
    complexed with hem

Details for d5kyoa_

PDB Entry: 5kyo (more details), 1.8 Å

PDB Description: crystal structure of cyp101j2
PDB Compounds: (A:) cyp101j2

SCOPe Domain Sequences for d5kyoa_:

Sequence, based on SEQRES records: (download)

>d5kyoa_ a.104.1.0 (A:) automated matches {Sphingobium yanoikuyae [TaxId: 13690]}
mterpdnvpadrvfdfdiyrdvpegldfhqswreimrqaphplmwtphngghwvalrsdl
aetvmsdferfsnhtvlvpketageayrliplsldppehrpfrsllnenlgpkplrpieq
vvtdlavsliegfrpkgrcnfthefaeqlpvrifmrivdlpvedlpklkhladqytrpdg
siplddvtkqfreylrpviearrikpgedmisrmingevggrpltdieaeniciqvlvgg
ldtvvnmlgftfshlakdhalrraiaadpsliddalleffrrfpvvssarevlrdqefeg
vllkagdmvmaptvvvamddarnedplefrlgrkarqhstfgkgshtcpgahlarmemkv
vlrewfaripefrieddaplrysngivgsvkpfvlewpv

Sequence, based on observed residues (ATOM records): (download)

>d5kyoa_ a.104.1.0 (A:) automated matches {Sphingobium yanoikuyae [TaxId: 13690]}
mterpdnvpadrvfdfdiyrdvpegldfhqswreimrqaphplmwtphngghwvalrsdl
aetvmsdferfsnhtvlvpketageayrliplsldppehrpfrsllnenlgpkplrpieq
vvtdlavsliegfrpkgrcnfthefaeqlpvrifmrivdlpvedlpklkhladqytipld
dvtkqfreylrpviearrikpgedmisrmingevggrpltdieaeniciqvlvggldtvv
nmlgftfshlakdhalrraiaadpsliddalleffrrfpvvssarevlrdqefegvllka
gdmvmaptvvvamddarnedplefrlgrkarqhstfgkgshtcpgahlarmemkvvlrew
faripefrieddaplrysngivgsvkpfvlewpv

SCOPe Domain Coordinates for d5kyoa_:

Click to download the PDB-style file with coordinates for d5kyoa_.
(The format of our PDB-style files is described here.)

Timeline for d5kyoa_:

  • d5kyoa_ appears in periodic updates to SCOPe 2.06 starting on 2017-01-04