SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for d5kyob_ (5kyo B:)

  1. Root: SCOPe 2.06
  2. 1976409Class a: All alpha proteins [46456] (289 folds)
  3. 2004931Fold a.104: Cytochrome P450 [48263] (1 superfamily)
    multihelical
  4. 2004932Superfamily a.104.1: Cytochrome P450 [48264] (2 families) (S)
  5. 2005528Family a.104.1.0: automated matches [191509] (1 protein)
    not a true family
  6. 2005529Protein automated matches [190847] (58 species)
    not a true protein
  7. 2284534Species Sphingobium yanoikuyae [TaxId:13690] [327835] (1 PDB entry)
  8. 2284574Domain d5kyob_: 5kyo B: [327875]
    automated match to d4dxya_
    complexed with hem

Details for d5kyob_

PDB Entry: 5kyo (more details), 1.8 Å

PDB Description: crystal structure of cyp101j2
PDB Compounds: (B:) cyp101j2

SCOPe Domain Sequences for d5kyob_:

Sequence, based on SEQRES records: (download)

>d5kyob_ a.104.1.0 (B:) automated matches {Sphingobium yanoikuyae [TaxId: 13690]}
terpdnvpadrvfdfdiyrdvpegldfhqswreimrqaphplmwtphngghwvalrsdla
etvmsdferfsnhtvlvpketageayrliplsldppehrpfrsllnenlgpkplrpieqv
vtdlavsliegfrpkgrcnfthefaeqlpvrifmrivdlpvedlpklkhladqytrpdgs
iplddvtkqfreylrpviearrikpgedmisrmingevggrpltdieaeniciqvlvggl
dtvvnmlgftfshlakdhalrraiaadpsliddalleffrrfpvvssarevlrdqefegv
llkagdmvmaptvvvamddarnedplefrlgrkarqhstfgkgshtcpgahlarmemkvv
lrewfaripefrieddaplrysngivgsvkpfvlewpv

Sequence, based on observed residues (ATOM records): (download)

>d5kyob_ a.104.1.0 (B:) automated matches {Sphingobium yanoikuyae [TaxId: 13690]}
terpdnvpadrvfdfdiyrdvpegldfhqswreimrqphplmwtphngghwvalrsdlae
tvmsdferfsnhtvlvpketageayrliplsldppehrpfrsllnenlgpkplrpieqvv
tdlavsliegfrpkgrcnfthefaeqlpvrifmrivdlpvedlpklkhladqytripldd
vtkqfreylrpviearrikpgedmisrmingevggrpltdieaeniciqvlvggldtvvn
mlgftfshlakdhalrraiaadpsliddalleffrrfpvvssarevlrdqefegvllkag
dmvmaptvvvamddarnedplefrlgrkarqhstfgkgshtcpgahlarmemkvvlrewf
aripefrieddaplrysngivgsvkpfvlewpv

SCOPe Domain Coordinates for d5kyob_:

Click to download the PDB-style file with coordinates for d5kyob_.
(The format of our PDB-style files is described here.)

Timeline for d5kyob_:

  • d5kyob_ appears in periodic updates to SCOPe 2.06 starting on 2017-01-04