SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for d5kyod_ (5kyo D:)

  1. Root: SCOPe 2.06
  2. 1976409Class a: All alpha proteins [46456] (289 folds)
  3. 2004931Fold a.104: Cytochrome P450 [48263] (1 superfamily)
    multihelical
  4. 2004932Superfamily a.104.1: Cytochrome P450 [48264] (2 families) (S)
  5. 2005528Family a.104.1.0: automated matches [191509] (1 protein)
    not a true family
  6. 2005529Protein automated matches [190847] (58 species)
    not a true protein
  7. 2284534Species Sphingobium yanoikuyae [TaxId:13690] [327835] (1 PDB entry)
  8. 2284535Domain d5kyod_: 5kyo D: [327836]
    automated match to d4dxya_
    complexed with hem

Details for d5kyod_

PDB Entry: 5kyo (more details), 1.8 Å

PDB Description: crystal structure of cyp101j2
PDB Compounds: (D:) cyp101j2

SCOPe Domain Sequences for d5kyod_:

Sequence, based on SEQRES records: (download)

>d5kyod_ a.104.1.0 (D:) automated matches {Sphingobium yanoikuyae [TaxId: 13690]}
erpdnvpadrvfdfdiyrdvpegldfhqswreimrqaphplmwtphngghwvalrsdlae
tvmsdferfsnhtvlvpketageayrliplsldppehrpfrsllnenlgpkplrpieqvv
tdlavsliegfrpkgrcnfthefaeqlpvrifmrivdlpvedlpklkhladqytrpdgsi
plddvtkqfreylrpviearrikpgedmisrmingevggrpltdieaeniciqvlvggld
tvvnmlgftfshlakdhalrraiaadpsliddalleffrrfpvvssarevlrdqefegvl
lkagdmvmaptvvvamddarnedplefrlgrkarqhstfgkgshtcpgahlarmemkvvl
rewfaripefrieddaplrysngivgsvkpfvlewpv

Sequence, based on observed residues (ATOM records): (download)

>d5kyod_ a.104.1.0 (D:) automated matches {Sphingobium yanoikuyae [TaxId: 13690]}
erpdnvpadrvfdfdiyrdvpgldfhqswreimrphplmwtphngghwvalrsdlaetvm
sdferfsnhtvlvpketageayrliplsldppehrpfrsllnenlgpkplrpieqvvtdl
avsliegfrpkgrcnfthefaeqlpvrifmrivdlpvedlpklkhladqytrpdplddvt
kqfreylrpviearrikpgedmisrminltdieaeniciqvlvggldtvvnmlgftfshl
akdhalrraiaadpsliddalleffrrfpvvssarevlrdqefegvllkagdmvmaptvv
vamddarnedplefrlgrkarqhstfgkgshtcpgahlarmemkvvlrewfaripefrie
ddaplrysngivgsvkpfvlewpv

SCOPe Domain Coordinates for d5kyod_:

Click to download the PDB-style file with coordinates for d5kyod_.
(The format of our PDB-style files is described here.)

Timeline for d5kyod_:

  • d5kyod_ appears in periodic updates to SCOPe 2.06 starting on 2017-01-04