SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Species: Influenza a virus [TaxId: 1332244]

  1. Root: SCOPe 2.06
  2. 2237529Class h: Coiled coil proteins [57942] (7 folds)
  3. 2238933Fold h.3: Stalk segment of viral fusion proteins [58063] (3 superfamilies)
    core: trimeric coiled coil
  4. 2238934Superfamily h.3.1: Influenza hemagglutinin (stalk) [58064] (2 families) (S)
  5. 2239599Family h.3.1.0: automated matches [254278] (1 protein)
    not a true family
  6. 2239600Protein automated matches [254645] (21 species)
    not a true protein
  7. 2284510Species Influenza a virus [TaxId:1332244] [327811] (4 PDB entries)

PDB entries in Species: Influenza a virus [TaxId: 1332244]:

  1. Domain(s) for 5t6s:
    1. 2284511Domain d5t6sh_: 5t6s H: [327812]
      Other proteins in same PDB: d5t6sa_, d5t6sc_, d5t6se_, d5t6sg_, d5t6si_, d5t6sk_
      automated match to d4kdmb_
      complexed with 75u, bma, na, nag
    2. 2284519Domain d5t6sf_: 5t6s F: [327820]
      Other proteins in same PDB: d5t6sa_, d5t6sc_, d5t6se_, d5t6sg_, d5t6si_, d5t6sk_
      automated match to d4kdmb_
      complexed with 75u, bma, na, nag
    3. 2284524Domain d5t6sl_: 5t6s L: [327825]
      Other proteins in same PDB: d5t6sa_, d5t6sc_, d5t6se_, d5t6sg_, d5t6si_, d5t6sk_
      automated match to d4kdmb_
      complexed with 75u, bma, na, nag
    4. 2284554Domain d5t6sb_: 5t6s B: [327855]
      Other proteins in same PDB: d5t6sa_, d5t6sc_, d5t6se_, d5t6sg_, d5t6si_, d5t6sk_
      automated match to d4kdmb_
      complexed with 75u, bma, na, nag
    5. 2284559Domain d5t6sj_: 5t6s J: [327860]
      Other proteins in same PDB: d5t6sa_, d5t6sc_, d5t6se_, d5t6sg_, d5t6si_, d5t6sk_
      automated match to d4kdmb_
      complexed with 75u, bma, na, nag
    6. 2284570Domain d5t6sd_: 5t6s D: [327871]
      Other proteins in same PDB: d5t6sa_, d5t6sc_, d5t6se_, d5t6sg_, d5t6si_, d5t6sk_
      automated match to d4kdmb_
      complexed with 75u, bma, na, nag
  2. Domain(s) for 5vjk:
  3. Domain(s) for 5vjl:
  4. Domain(s) for 5vjm:

More info for Species Influenza a virus [TaxId:1332244] from h.3.1.0 automated matches

Timeline for Species Influenza a virus [TaxId:1332244] from h.3.1.0 automated matches:

  • Species Influenza a virus [TaxId:1332244] from h.3.1.0 automated matches appears in periodic updates to SCOPe 2.06 starting on 2017-01-04