SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Species: Influenza a virus (strain a/hong kong/1/1968 h3n2) [TaxId: 506350]

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2040266Fold b.19: Viral protein domain [49817] (1 superfamily)
    sandwich; 9 strands in 2 sheets; jelly-roll; form trimers
  4. 2040267Superfamily b.19.1: Viral protein domain [49818] (4 families) (S)
    forms homotrimers
  5. 2040896Family b.19.1.0: automated matches [227246] (1 protein)
    not a true family
  6. 2040897Protein automated matches [227017] (32 species)
    not a true protein
  7. 2284507Species Influenza a virus (strain a/hong kong/1/1968 h3n2) [TaxId:506350] [327808] (11 PDB entries)

PDB entries in Species: Influenza a virus (strain a/hong kong/1/1968 h3n2) [TaxId: 506350]:

  1. Domain(s) for 5t6n:
    1. 2284508Domain d5t6na1: 5t6n A:11-326 [327809]
      Other proteins in same PDB: d5t6na2, d5t6nb_, d5t6nc2, d5t6nd_, d5t6ne2, d5t6nf_
      automated match to d4xkga_
      complexed with 75u, bma, gol, man, nag, so4
    2. 2284550Domain d5t6nc1: 5t6n C:11-325 [327851]
      Other proteins in same PDB: d5t6na2, d5t6nb_, d5t6nc2, d5t6nd_, d5t6ne2, d5t6nf_
      automated match to d4xkga_
      complexed with 75u, bma, gol, man, nag, so4
    3. 2284555Domain d5t6ne1: 5t6n E:11-326 [327856]
      Other proteins in same PDB: d5t6na2, d5t6nb_, d5t6nc2, d5t6nd_, d5t6ne2, d5t6nf_
      automated match to d4xkga_
      complexed with 75u, bma, gol, man, nag, so4
  2. Domain(s) for 5thf:
    1. 2289410Domain d5thfe1: 5thf E:11-325 [332711]
      Other proteins in same PDB: d5thfa2, d5thfb_, d5thfc2, d5thfd1, d5thfd2, d5thfe2, d5thff_
      automated match to d4xkga_
      complexed with bma, nag
    2. 2289454Domain d5thfa1: 5thf A:11-325 [332755]
      Other proteins in same PDB: d5thfa2, d5thfb_, d5thfc2, d5thfd1, d5thfd2, d5thfe2, d5thff_
      automated match to d4xkga_
      complexed with bma, nag
    3. 2289483Domain d5thfc1: 5thf C:11-324 [332784]
      Other proteins in same PDB: d5thfa2, d5thfb_, d5thfc2, d5thfd1, d5thfd2, d5thfe2, d5thff_
      automated match to d4xkga_
      complexed with bma, nag
  3. Domain(s) for 5vtq:
    1. 2292931Domain d5vtqc1: 5vtq C:11-325 [336232]
      Other proteins in same PDB: d5vtqa2, d5vtqb_, d5vtqc2, d5vtqd_, d5vtqe2, d5vtqf_
      automated match to d4xkga_
      complexed with bma, gal, man, nag, sia; mutant
    2. 2292942Domain d5vtqa1: 5vtq A:11-329 [336243]
      Other proteins in same PDB: d5vtqa2, d5vtqb_, d5vtqc2, d5vtqd_, d5vtqe2, d5vtqf_
      automated match to d4xkga_
      complexed with bma, gal, man, nag, sia; mutant
    3. 2292985Domain d5vtqe1: 5vtq E:11-325 [336286]
      Other proteins in same PDB: d5vtqa2, d5vtqb_, d5vtqc2, d5vtqd_, d5vtqe2, d5vtqf_
      automated match to d4xkga_
      complexed with bma, gal, man, nag, sia; mutant
  4. Domain(s) for 5vtr:
    1. 2292935Domain d5vtrc1: 5vtr C:11-325 [336236]
      Other proteins in same PDB: d5vtra2, d5vtrb_, d5vtrc2, d5vtrd_, d5vtre2, d5vtrf_
      automated match to d4xkga_
      complexed with bma, gal, man, nag, sia; mutant
    2. 2292988Domain d5vtra1: 5vtr A:11-329 [336289]
      Other proteins in same PDB: d5vtra2, d5vtrb_, d5vtrc2, d5vtrd_, d5vtre2, d5vtrf_
      automated match to d4xkga_
      complexed with bma, gal, man, nag, sia; mutant
    3. 2293045Domain d5vtre1: 5vtr E:11-325 [336346]
      Other proteins in same PDB: d5vtra2, d5vtrb_, d5vtrc2, d5vtrd_, d5vtre2, d5vtrf_
      automated match to d4xkga_
      complexed with bma, gal, man, nag, sia; mutant
  5. Domain(s) for 5vtu:
    1. 2292958Domain d5vtue1: 5vtu E:11-325 [336259]
      Other proteins in same PDB: d5vtua2, d5vtub_, d5vtuc2, d5vtud_, d5vtue2, d5vtuf_
      automated match to d4xkga_
      complexed with bma, man, nag; mutant
    2. 2293008Domain d5vtua1: 5vtu A:11-325 [336309]
      Other proteins in same PDB: d5vtua2, d5vtub_, d5vtuc2, d5vtud_, d5vtue2, d5vtuf_
      automated match to d4xkga_
      complexed with bma, man, nag; mutant
    3. 2293068Domain d5vtuc1: 5vtu C:11-325 [336369]
      Other proteins in same PDB: d5vtua2, d5vtub_, d5vtuc2, d5vtud_, d5vtue2, d5vtuf_
      automated match to d4xkga_
      complexed with bma, man, nag; mutant
  6. Domain(s) for 5vtv:
    1. 2292949Domain d5vtva1: 5vtv A:11-329 [336250]
      Other proteins in same PDB: d5vtva2, d5vtvb_, d5vtvc2, d5vtvd_, d5vtve2, d5vtvf_
      automated match to d4xkga_
      complexed with bma, gal, man, nag, sia, tam; mutant
    2. 2293019Domain d5vtvc1: 5vtv C:11-325 [336320]
      Other proteins in same PDB: d5vtva2, d5vtvb_, d5vtvc2, d5vtvd_, d5vtve2, d5vtvf_
      automated match to d4xkga_
      complexed with bma, gal, man, nag, sia, tam; mutant
    3. 2293122Domain d5vtve1: 5vtv E:11-325 [336423]
      Other proteins in same PDB: d5vtva2, d5vtvb_, d5vtvc2, d5vtvd_, d5vtve2, d5vtvf_
      automated match to d4xkga_
      complexed with bma, gal, man, nag, sia, tam; mutant
  7. Domain(s) for 5vtw:
    1. 2292952Domain d5vtwe1: 5vtw E:11-325 [336253]
      Other proteins in same PDB: d5vtwa2, d5vtwb_, d5vtwc2, d5vtwd_, d5vtwe2, d5vtwf_
      automated match to d4xkga_
      complexed with bma, gal, man, nag, sia, tam; mutant
    2. 2292976Domain d5vtwa1: 5vtw A:11-329 [336277]
      Other proteins in same PDB: d5vtwa2, d5vtwb_, d5vtwc2, d5vtwd_, d5vtwe2, d5vtwf_
      automated match to d4xkga_
      complexed with bma, gal, man, nag, sia, tam; mutant
    3. 2293110Domain d5vtwc1: 5vtw C:11-325 [336411]
      Other proteins in same PDB: d5vtwa2, d5vtwb_, d5vtwc2, d5vtwd_, d5vtwe2, d5vtwf_
      automated match to d4xkga_
      complexed with bma, gal, man, nag, sia, tam; mutant
  8. Domain(s) for 5vtx:
    1. 2292979Domain d5vtxc1: 5vtx C:11-325 [336280]
      Other proteins in same PDB: d5vtxa2, d5vtxb_, d5vtxc2, d5vtxd_, d5vtxe2, d5vtxf_
      automated match to d4xkga_
      complexed with bma, man, nag; mutant
    2. 2292993Domain d5vtxa1: 5vtx A:11-329 [336294]
      Other proteins in same PDB: d5vtxa2, d5vtxb_, d5vtxc2, d5vtxd_, d5vtxe2, d5vtxf_
      automated match to d4xkga_
      complexed with bma, man, nag; mutant
    3. 2293056Domain d5vtxe1: 5vtx E:11-325 [336357]
      Other proteins in same PDB: d5vtxa2, d5vtxb_, d5vtxc2, d5vtxd_, d5vtxe2, d5vtxf_
      automated match to d4xkga_
      complexed with bma, man, nag; mutant
  9. Domain(s) for 5vty:
    1. 2293029Domain d5vtyc1: 5vty C:11-325 [336330]
      Other proteins in same PDB: d5vtya2, d5vtyb_, d5vtyc2, d5vtyd_, d5vtye2, d5vtyf_
      automated match to d4xkga_
      complexed with bma, gal, man, nag, sia; mutant
    2. 2293035Domain d5vtye1: 5vty E:11-329 [336336]
      Other proteins in same PDB: d5vtya2, d5vtyb_, d5vtyc2, d5vtyd_, d5vtye2, d5vtyf_
      automated match to d4xkga_
      complexed with bma, gal, man, nag, sia; mutant
    3. 2293051Domain d5vtya1: 5vty A:11-325 [336352]
      Other proteins in same PDB: d5vtya2, d5vtyb_, d5vtyc2, d5vtyd_, d5vtye2, d5vtyf_
      automated match to d4xkga_
      complexed with bma, gal, man, nag, sia; mutant
  10. Domain(s) for 5vtz:
    1. 2293043Domain d5vtze1: 5vtz E:11-325 [336344]
      Other proteins in same PDB: d5vtza2, d5vtzb_, d5vtzc2, d5vtzd_, d5vtze2, d5vtzf_
      automated match to d4xkga_
      complexed with bma, man, nag; mutant
    2. 2293064Domain d5vtzc1: 5vtz C:11-325 [336365]
      Other proteins in same PDB: d5vtza2, d5vtzb_, d5vtzc2, d5vtzd_, d5vtze2, d5vtzf_
      automated match to d4xkga_
      complexed with bma, man, nag; mutant
    3. 2293066Domain d5vtza1: 5vtz A:11-329 [336367]
      Other proteins in same PDB: d5vtza2, d5vtzb_, d5vtzc2, d5vtzd_, d5vtze2, d5vtzf_
      automated match to d4xkga_
      complexed with bma, man, nag; mutant
  11. Domain(s) for 5vu4:
    1. 2293094Domain d5vu4c1: 5vu4 C:11-325 [336395]
      Other proteins in same PDB: d5vu4a2, d5vu4b_, d5vu4c2, d5vu4d_, d5vu4e2, d5vu4f_
      automated match to d4xkga_
      complexed with bma, gal, man, nag, sia; mutant
    2. 2293107Domain d5vu4e1: 5vu4 E:11-329 [336408]
      Other proteins in same PDB: d5vu4a2, d5vu4b_, d5vu4c2, d5vu4d_, d5vu4e2, d5vu4f_
      automated match to d4xkga_
      complexed with bma, gal, man, nag, sia; mutant
    3. 2293125Domain d5vu4a1: 5vu4 A:11-325 [336426]
      Other proteins in same PDB: d5vu4a2, d5vu4b_, d5vu4c2, d5vu4d_, d5vu4e2, d5vu4f_
      automated match to d4xkga_
      complexed with bma, gal, man, nag, sia; mutant

More info for Species Influenza a virus (strain a/hong kong/1/1968 h3n2) [TaxId:506350] from b.19.1.0 automated matches

Timeline for Species Influenza a virus (strain a/hong kong/1/1968 h3n2) [TaxId:506350] from b.19.1.0 automated matches:

  • Species Influenza a virus (strain a/hong kong/1/1968 h3n2) [TaxId:506350] from b.19.1.0 automated matches appears in periodic updates to SCOPe 2.06 starting on 2017-01-04