SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for d5mp6q1 (5mp6 Q:1-108)

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2017115Fold b.1: Immunoglobulin-like beta-sandwich [48725] (33 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 2017116Superfamily b.1.1: Immunoglobulin [48726] (5 families) (S)
  5. 2026644Family b.1.1.0: automated matches [191470] (1 protein)
    not a true family
  6. 2026645Protein automated matches [190740] (27 species)
    not a true protein
  7. 2026747Species Human (Homo sapiens) [TaxId:9606] [187920] (859 PDB entries)
  8. 2284413Domain d5mp6q1: 5mp6 Q:1-108 [327714]
    Other proteins in same PDB: d5mp6l2, d5mp6q2
    automated match to d2mcg11
    complexed with so4

Details for d5mp6q1

PDB Entry: 5mp6 (more details), 1.96 Å

PDB Description: structure of the unliganded fab from hiv-1 neutralizing antibody cap248-2b that binds to the gp120 c-terminus - gp41 interface, at two angstrom resolution.
PDB Compounds: (Q:) CAP248-2B Light Chain

SCOPe Domain Sequences for d5mp6q1:

Sequence, based on SEQRES records: (download)

>d5mp6q1 b.1.1.0 (Q:1-108) automated matches {Human (Homo sapiens) [TaxId: 9606]}
esaltqpasvsgspgqsisisctgtssdiggykyvswyqqhpgrapkliiydvikrpsgi
sdrfsgsksantasltisglqagdeasyycssyttkktsffgpatrayvfgsgtqvtvlg

Sequence, based on observed residues (ATOM records): (download)

>d5mp6q1 b.1.1.0 (Q:1-108) automated matches {Human (Homo sapiens) [TaxId: 9606]}
esaltqpasvsgspgqsisisctgtssdiggykyvswyqqhpgrapkliiydvikrpsgi
sdrfsgsksantasltisglqagdeasyycssyttrayvfgsgtqvtvlg

SCOPe Domain Coordinates for d5mp6q1:

Click to download the PDB-style file with coordinates for d5mp6q1.
(The format of our PDB-style files is described here.)

Timeline for d5mp6q1:

  • d5mp6q1 appears in periodic updates to SCOPe 2.06 starting on 2016-12-29

View in 3D
Domains from same chain:
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d5mp6q2