SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for d5infe1 (5inf E:16-263)

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2099098Fold c.14: ClpP/crotonase [52095] (1 superfamily)
    core: 4 turns of (beta-beta-alpha)n superhelix
  4. 2099099Superfamily c.14.1: ClpP/crotonase [52096] (5 families) (S)
  5. 2100042Family c.14.1.0: automated matches [191346] (1 protein)
    not a true family
  6. 2100043Protein automated matches [190246] (53 species)
    not a true protein
  7. 2284282Species Streptomyces ambofaciens [TaxId:278992] [327583] (3 PDB entries)
  8. 2284364Domain d5infe1: 5inf E:16-263 [327665]
    automated match to d3iava1
    complexed with hxc

Details for d5infe1

PDB Entry: 5inf (more details), 2.75 Å

PDB Description: structural basis for acyl-coa carboxylase-mediated assembly of unusual polyketide synthase extender units incorporated into the stambomycin antibiotics
PDB Compounds: (E:) Carboxyl transferase

SCOPe Domain Sequences for d5infe1:

Sequence, based on SEQRES records: (download)

>d5infe1 c.14.1.0 (E:16-263) automated matches {Streptomyces ambofaciens [TaxId: 278992]}
stadriadlaarheeavvlaekkaadrqhlkgkltararidllldpgsfveldefvrhrt
veagiprpygdgvvtghgtidgrqvcvfshdfttlggsmgeafgskvvkiydfamsvgcp
vigindsggariqegvmsiayytelgvrnvhssgvipqislimgpcaggsvyspaltdft
vmvkdisymfvtgpevvsavmgeqvtaeqlggpavhaevsgnahyvgddeqdaiswvqtl
lgylppnn

Sequence, based on observed residues (ATOM records): (download)

>d5infe1 c.14.1.0 (E:16-263) automated matches {Streptomyces ambofaciens [TaxId: 278992]}
stadriadlaarheeavvlaekkaadrqhlkgkltararidllldpgsfveldefvrhrt
vprpygdgvvtghgtidgrqvcvfshdfttlggsmgeafgskvvkiydfamsvgcpvigi
ndsggariqegvmsiayytelgvrnvhssgvipqislimgpcaggsvyspaltdftvmvk
disymfvtgpevvgeqvtaeqlggpavhaevsgnahyvgddeqdaiswvqtllgylppnn

SCOPe Domain Coordinates for d5infe1:

Click to download the PDB-style file with coordinates for d5infe1.
(The format of our PDB-style files is described here.)

Timeline for d5infe1:

  • d5infe1 appears in periodic updates to SCOPe 2.06 starting on 2016-12-29