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Lineage for d5jymd1 (5jym D:1-121)

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2017115Fold b.1: Immunoglobulin-like beta-sandwich [48725] (33 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 2017116Superfamily b.1.1: Immunoglobulin [48726] (5 families) (S)
  5. 2026644Family b.1.1.0: automated matches [191470] (1 protein)
    not a true family
  6. 2026645Protein automated matches [190740] (27 species)
    not a true protein
  7. 2028399Species Mouse (Mus musculus) [TaxId:10090] [188198] (562 PDB entries)
  8. 2284335Domain d5jymd1: 5jym D:1-121 [327636]
    Other proteins in same PDB: d5jyma1, d5jyma2, d5jymc1, d5jymc2
    automated match to d1dzba1
    complexed with ca

Details for d5jymd1

PDB Entry: 5jym (more details), 2.45 Å

PDB Description: human p-cadherin ec12 with scfv tsp11 bound
PDB Compounds: (D:) Antibody scFv TSP11

SCOPe Domain Sequences for d5jymd1:

Sequence, based on SEQRES records: (download)

>d5jymd1 b.1.1.0 (D:1-121) automated matches {Mouse (Mus musculus) [TaxId: 10090]}

Sequence, based on observed residues (ATOM records): (download)

>d5jymd1 b.1.1.0 (D:1-121) automated matches {Mouse (Mus musculus) [TaxId: 10090]}

SCOPe Domain Coordinates for d5jymd1:

Click to download the PDB-style file with coordinates for d5jymd1.
(The format of our PDB-style files is described here.)

Timeline for d5jymd1:

  • d5jymd1 appears in periodic updates to SCOPe 2.06 starting on 2016-12-29