SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Species: Rhizobium leguminosarum [TaxId: 387]

  1. Root: SCOPe 2.06
  2. 1976409Class a: All alpha proteins [46456] (289 folds)
  3. 1981147Fold a.4: DNA/RNA-binding 3-helical bundle [46688] (14 superfamilies)
    core: 3-helices; bundle, closed or partly opened, right-handed twist; up-and down
  4. 1982196Superfamily a.4.5: "Winged helix" DNA-binding domain [46785] (85 families) (S)
    contains a small beta-sheet (wing)
  5. 1983660Family a.4.5.0: automated matches [191329] (1 protein)
    not a true family
  6. 1983661Protein automated matches [190154] (64 species)
    not a true protein
  7. 2284253Species Rhizobium leguminosarum [TaxId:387] [327554] (2 PDB entries)

PDB entries in Species: Rhizobium leguminosarum [TaxId: 387]:

  1. Domain(s) for 5fd5:
    1. 2284254Domain d5fd5b_: 5fd5 B: [327555]
      automated match to d4rb2c_
      complexed with edo, so4
    2. 2284258Domain d5fd5e_: 5fd5 E: [327559]
      automated match to d4rb2c_
      complexed with edo, so4
    3. 2284285Domain d5fd5a_: 5fd5 A: [327586]
      automated match to d4rb2c_
      complexed with edo, so4
    4. 2284311Domain d5fd5d_: 5fd5 D: [327612]
      automated match to d4rb2c_
      complexed with edo, so4
    5. 2284325Domain d5fd5c_: 5fd5 C: [327626]
      automated match to d4rb2c_
      complexed with edo, so4
  2. Domain(s) for 5fd6:
    1. 2284259Domain d5fd6b_: 5fd6 B: [327560]
      automated match to d4rb2c_
      complexed with gol, so4, zn
    2. 2284265Domain d5fd6d_: 5fd6 D: [327566]
      automated match to d4rb2c_
      complexed with gol, so4, zn
    3. 2284298Domain d5fd6a_: 5fd6 A: [327599]
      automated match to d4rb2c_
      complexed with gol, so4, zn
    4. 2284305Domain d5fd6c_: 5fd6 C: [327606]
      automated match to d4rb2c_
      complexed with gol, so4, zn

More info for Species Rhizobium leguminosarum [TaxId:387] from a.4.5.0 automated matches

Timeline for Species Rhizobium leguminosarum [TaxId:387] from a.4.5.0 automated matches:

  • Species Rhizobium leguminosarum [TaxId:387] from a.4.5.0 automated matches appears in periodic updates to SCOPe 2.06 starting on 2016-12-28