Lineage for d5thtd_ (5tht D:)

  1. Root: SCOPe 2.07
  2. 2413226Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2453552Fold c.42: Arginase/deacetylase [52767] (1 superfamily)
    3 layers: a/b/a, parallel beta-sheet of 8 strands, order 21387456
  4. 2453553Superfamily c.42.1: Arginase/deacetylase [52768] (3 families) (S)
  5. 2453831Family c.42.1.2: Histone deacetylase, HDAC [52773] (4 protein domains)
    automatically mapped to Pfam PF00850
  6. 2453876Protein automated matches [190786] (1 species)
    not a true protein
  7. 2453877Species Human (Homo sapiens) [TaxId:9606] [188039] (33 PDB entries)
  8. 2453929Domain d5thtd_: 5tht D: [327489]
    Other proteins in same PDB: d5thta2, d5thtb2
    automated match to d2v5wb_
    complexed with b3n, edo, k, zn

Details for d5thtd_

PDB Entry: 5tht (more details), 2.41 Å

PDB Description: crystal structure of g303a hdac8 in complex with m344
PDB Compounds: (D:) Histone deacetylase 8

SCOPe Domain Sequences for d5thtd_:

Sequence, based on SEQRES records: (download)

>d5thtd_ c.42.1.2 (D:) automated matches {Human (Homo sapiens) [TaxId: 9606]}
lvpvyiyspeyvsmcdslakipkrasmvhslieayalhkqmrivkpkvasmeematfhtd
aylqhlqkvsqegdddhpdsieyglgydcpategifdyaaaiggatitaaqclidgmckv
ainwsggwhhakkdeasgfcylndavlgilrlrrkferilyvdldlhhgdgvedafsfts
kvmtvslhkfspgffpgtgdvsdvglgkgryysvnvpiqdgiqdekyyqicesvlkevyq
afnpkavvlqlgadtiagdpmcsfnmtpvgigkclkyilqwqlatlilgaggynlantar
cwtyltgvilgktlsseipdhefftaygpdyvleitpscrpdrnephriqqilnyikgnl
khvv

Sequence, based on observed residues (ATOM records): (download)

>d5thtd_ c.42.1.2 (D:) automated matches {Human (Homo sapiens) [TaxId: 9606]}
lvpvyiyspeyvsmcdslakipkrasmvhslieayalhkqmrivkpkvasmeematfhtd
aylqhlqkvsqcpategifdyaaaiggatitaaqclidgmckvainwsggwhhakkdeas
gfcylndavlgilrlrrkferilyvdldlhhgdgvedafsftskvmtvslhkfspgffpg
tgdvsdvglgkgryysvnvpiqdgiqdekyyqicesvlkevyqafnpkavvlqlgadtia
gdpmcsfnmtpvgigkclkyilqwqlatlilgaggynlantarcwtyltgvilgktlsse
ipdhefftaygpdyvleitpscrpdrnephriqqilnyikgnlkhvv

SCOPe Domain Coordinates for d5thtd_:

Click to download the PDB-style file with coordinates for d5thtd_.
(The format of our PDB-style files is described here.)

Timeline for d5thtd_: