SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Species: Danio rerio [TaxId: 7955]

  1. Root: SCOPe 2.06
  2. 2152203Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2185755Fold d.96: T-fold [55619] (2 superfamilies)
    beta(2)-alpha(2)-beta(2); 2 layers: alpha/beta; antiparallel sheet 1234
    tunnel-shaped: its known members form wide oligomeric barrels different sizes
  4. 2185756Superfamily d.96.1: Tetrahydrobiopterin biosynthesis enzymes-like [55620] (5 families) (S)
    bind purine or pterin in topologically similar sites between subunits
  5. 2186309Family d.96.1.0: automated matches [227243] (1 protein)
    not a true family
  6. 2186310Protein automated matches [227009] (13 species)
    not a true protein
  7. 2284150Species Danio rerio [TaxId:7955] [327451] (2 PDB entries)

PDB entries in Species: Danio rerio [TaxId: 7955]:

  1. Domain(s) for 5ll1:
    1. 2285654Domain d5ll1c1: 5ll1 C:8-142 [328955]
      automated match to d4n9sa1
    2. 2285655Domain d5ll1c2: 5ll1 C:143-294 [328956]
      automated match to d4n9sa2
    3. 2285658Domain d5ll1a1: 5ll1 A:8-142 [328959]
      automated match to d4n9sa1
    4. 2285659Domain d5ll1a2: 5ll1 A:143-294 [328960]
      automated match to d4n9sa2
    5. 2285691Domain d5ll1f1: 5ll1 F:8-142 [328992]
      automated match to d4n9sa1
    6. 2285692Domain d5ll1f2: 5ll1 F:143-294 [328993]
      automated match to d4n9sa2
    7. 2285706Domain d5ll1g1: 5ll1 G:8-142 [329007]
      automated match to d4n9sa1
    8. 2285707Domain d5ll1g2: 5ll1 G:143-294 [329008]
      automated match to d4n9sa2
    9. 2285709Domain d5ll1h1: 5ll1 H:8-142 [329010]
      automated match to d4n9sa1
    10. 2285710Domain d5ll1h2: 5ll1 H:143-294 [329011]
      automated match to d4n9sa2
    11. 2285757Domain d5ll1b1: 5ll1 B:8-142 [329058]
      automated match to d4n9sa1
    12. 2285758Domain d5ll1b2: 5ll1 B:143-294 [329059]
      automated match to d4n9sa2
    13. 2285787Domain d5ll1d1: 5ll1 D:8-142 [329088]
      automated match to d4n9sa1
    14. 2285788Domain d5ll1d2: 5ll1 D:143-294 [329089]
      automated match to d4n9sa2
    15. 2285862Domain d5ll1e1: 5ll1 E:8-142 [329163]
      automated match to d4n9sa1
    16. 2285863Domain d5ll1e2: 5ll1 E:143-294 [329164]
      automated match to d4n9sa2
  2. Domain(s) for 5m98:
    1. 2284151Domain d5m98a1: 5m98 A:8-142 [327452]
      automated match to d4n9sa1
    2. 2284152Domain d5m98a2: 5m98 A:143-294 [327453]
      automated match to d4n9sa2
    3. 2284154Domain d5m98c1: 5m98 C:8-142 [327455]
      automated match to d4n9sa1
    4. 2284155Domain d5m98c2: 5m98 C:143-294 [327456]
      automated match to d4n9sa2
    5. 2284157Domain d5m98h1: 5m98 H:8-142 [327458]
      automated match to d4n9sa1
    6. 2284158Domain d5m98h2: 5m98 H:143-294 [327459]
      automated match to d4n9sa2
    7. 2284173Domain d5m98d1: 5m98 D:8-142 [327474]
      automated match to d4n9sa1
    8. 2284174Domain d5m98d2: 5m98 D:143-294 [327475]
      automated match to d4n9sa2
    9. 2284207Domain d5m98e1: 5m98 E:8-142 [327508]
      automated match to d4n9sa1
    10. 2284208Domain d5m98e2: 5m98 E:143-294 [327509]
      automated match to d4n9sa2
    11. 2284209Domain d5m98b1: 5m98 B:8-142 [327510]
      automated match to d4n9sa1
    12. 2284210Domain d5m98b2: 5m98 B:143-294 [327511]
      automated match to d4n9sa2
    13. 2284219Domain d5m98g1: 5m98 G:8-142 [327520]
      automated match to d4n9sa1
    14. 2284220Domain d5m98g2: 5m98 G:143-294 [327521]
      automated match to d4n9sa2
    15. 2284241Domain d5m98f1: 5m98 F:8-142 [327542]
      automated match to d4n9sa1
    16. 2284242Domain d5m98f2: 5m98 F:143-294 [327543]
      automated match to d4n9sa2

More info for Species Danio rerio [TaxId:7955] from d.96.1.0 automated matches

Timeline for Species Danio rerio [TaxId:7955] from d.96.1.0 automated matches:

  • Species Danio rerio [TaxId:7955] from d.96.1.0 automated matches appears in periodic updates to SCOPe 2.06 starting on 2016-12-22