SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for d5kyta_ (5kyt A:)

  1. Root: SCOPe 2.06
  2. 2217451Class e: Multi-domain proteins (alpha and beta) [56572] (69 folds)
  3. 2222543Fold e.23: Acetyl-CoA synthetase-like [56800] (1 superfamily)
    4 domains: (1&2) duplication: share the same alpha/beta fold; (3) beta-barrel; (4) alpha+beta
  4. 2222544Superfamily e.23.1: Acetyl-CoA synthetase-like [56801] (2 families) (S)
  5. 2222545Family e.23.1.1: Acetyl-CoA synthetase-like [56802] (7 protein domains)
  6. 2222613Protein automated matches [193584] (2 species)
    not a true protein
  7. 2222614Species Firefly (Photinus pyralis) [TaxId:7054] [193585] (6 PDB entries)
  8. 2284091Domain d5kyta_: 5kyt A: [327392]
    automated match to d4g36b_
    complexed with edo, slu

Details for d5kyta_

PDB Entry: 5kyt (more details), 2 Å

PDB Description: structure of photinus pyralis luciferase red light emitting variant
PDB Compounds: (A:) Luciferin 4-monooxygenase

SCOPe Domain Sequences for d5kyta_:

Sequence, based on SEQRES records: (download)

>d5kyta_ e.23.1.1 (A:) automated matches {Firefly (Photinus pyralis) [TaxId: 7054]}
aknikkgpapfypledgtageqlhkamkryalvpgtiaftdahievnityaeyfemsvrl
aeamkryglntnhrivvcsenslqffmpvlgalfigvavapandiynerellnsmnisqp
tvvfvskkglqkilnvqkklpiiqkiiimdsktdyqgfqsmytfvtshlppgfneydfvp
esfdrdktialimnssgstglpkgvalphrtacvrfshardpifgnqiipdtailsvvpf
hhgfgmfttlgylicgfrvvlmyrfeeelflrslqdykiqtallvptlfsffakstlidk
ydlsnlheiasggaplskevgeavakrfhlpgirqgygltettsailitpegddkpgavg
kvvpffeakvvdldtgktlgvnqrgelcvrgpmimsgyvnnpeatnalidkdgwlhsgdi
aywdedehffivdrlkslikykgyqvapaelesillqhpnifdagvaglpdddagelpaa
vvvlehgktmtekeivdyvasqvttakklrggvvfvdevpkgltgkldarkireilikak

Sequence, based on observed residues (ATOM records): (download)

>d5kyta_ e.23.1.1 (A:) automated matches {Firefly (Photinus pyralis) [TaxId: 7054]}
aknikkgpapfypledgtageqlhkamkryalvpgtiaftdahievnityaeyfemsvrl
aeamkryglntnhrivvcsenslqffmpvlgalfigvavapandiynerellnsmnisqp
tvvfvskkglqkilnvqkklpiiqkiiimdsktdyqgfqsmytfvtshlppgfneydfvp
esfdrdktialimnssgstglpkgvalphrtacvrfshardpifgnqiipdtailsvvpf
hhgfgmfttlgylicgfrvvlmyrfeeelflrslqdykiqtallvptlfsffakstlidk
ydlsnlheiasggaplskevgeavakrfhlpgirqgygltettsailitpegddkpgavg
kvvpffeakvvdldtgktlgvnqrgelcvrgpmimsgyvnnpeatnalidkdgwlhsgdi
aywdedehffivdrlkslikykgyqvapaelesillqhpfdagvaglpdddagelpaavv
vleekeivdyvasqvttakklrggvvfvdevpkgltgkldarkireilikak

SCOPe Domain Coordinates for d5kyta_:

Click to download the PDB-style file with coordinates for d5kyta_.
(The format of our PDB-style files is described here.)

Timeline for d5kyta_:

  • d5kyta_ appears in periodic updates to SCOPe 2.06 starting on 2016-12-22