SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for d5kytb_ (5kyt B:)

  1. Root: SCOPe 2.06
  2. 2217451Class e: Multi-domain proteins (alpha and beta) [56572] (69 folds)
  3. 2222543Fold e.23: Acetyl-CoA synthetase-like [56800] (1 superfamily)
    4 domains: (1&2) duplication: share the same alpha/beta fold; (3) beta-barrel; (4) alpha+beta
  4. 2222544Superfamily e.23.1: Acetyl-CoA synthetase-like [56801] (2 families) (S)
  5. 2222545Family e.23.1.1: Acetyl-CoA synthetase-like [56802] (7 protein domains)
  6. 2222613Protein automated matches [193584] (2 species)
    not a true protein
  7. 2222614Species Firefly (Photinus pyralis) [TaxId:7054] [193585] (6 PDB entries)
  8. 2284088Domain d5kytb_: 5kyt B: [327389]
    automated match to d4g36b_
    complexed with edo, slu

Details for d5kytb_

PDB Entry: 5kyt (more details), 2 Å

PDB Description: structure of photinus pyralis luciferase red light emitting variant
PDB Compounds: (B:) Luciferin 4-monooxygenase

SCOPe Domain Sequences for d5kytb_:

Sequence, based on SEQRES records: (download)

>d5kytb_ e.23.1.1 (B:) automated matches {Firefly (Photinus pyralis) [TaxId: 7054]}
aknikkgpapfypledgtageqlhkamkryalvpgtiaftdahievnityaeyfemsvrl
aeamkryglntnhrivvcsenslqffmpvlgalfigvavapandiynerellnsmnisqp
tvvfvskkglqkilnvqkklpiiqkiiimdsktdyqgfqsmytfvtshlppgfneydfvp
esfdrdktialimnssgstglpkgvalphrtacvrfshardpifgnqiipdtailsvvpf
hhgfgmfttlgylicgfrvvlmyrfeeelflrslqdykiqtallvptlfsffakstlidk
ydlsnlheiasggaplskevgeavakrfhlpgirqgygltettsailitpegddkpgavg
kvvpffeakvvdldtgktlgvnqrgelcvrgpmimsgyvnnpeatnalidkdgwlhsgdi
aywdedehffivdrlkslikykgyqvapaelesillqhpnifdagvaglpdddagelpaa
vvvlehgktmtekeivdyvasqvttakklrggvvfvdevpkgltgkldarkireilikak
kggkskl

Sequence, based on observed residues (ATOM records): (download)

>d5kytb_ e.23.1.1 (B:) automated matches {Firefly (Photinus pyralis) [TaxId: 7054]}
aknikkgpapfypledgtageqlhkamkryalvpgtiaftdahievnityaeyfemsvrl
aeamkryglntnhrivvcsenslqffmpvlgalfigvavapandiynerellnsmnisqp
tvvfvskkglqkilnvqkklpiiqkiiimdsktdyqgfqsmytfvtshlppgfneydfvp
esfdrdktialimnsslpkgvalphrtacvrfshardpifgnqiipdtailsvvpfhhgf
gmfttlgylicgfrvvlmyrfeeelflrslqdykiqtallvptlfsffakstlidkydls
nlheiasggaplskevgeavakrfhlpgirqgygltettsailitpegddkpgavgkvvp
ffeakvvdldtgktlgvnqrgelcvrgpmimsgyvnnpeatnalidkdgwlhsgdiaywd
edehffivdrlkslikykgyqvapaelesillqhpnifdagvaglpdddagelpaavvvl
ehgktmtekeivdyvasqvttakklrggvvfvdevpkgltgkldarkireilikakkggk
skl

SCOPe Domain Coordinates for d5kytb_:

Click to download the PDB-style file with coordinates for d5kytb_.
(The format of our PDB-style files is described here.)

Timeline for d5kytb_:

  • d5kytb_ appears in periodic updates to SCOPe 2.06 starting on 2016-12-22