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Lineage for d5f89b2 (5f89 B:109-211)

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2017115Fold b.1: Immunoglobulin-like beta-sandwich [48725] (33 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 2017116Superfamily b.1.1: Immunoglobulin [48726] (5 families) (S)
  5. 2020524Family b.1.1.2: C1 set domains (antibody constant domain-like) [48942] (24 protein domains)
  6. 2024392Protein automated matches [190374] (13 species)
    not a true protein
  7. 2024406Species Human (Homo sapiens) [TaxId:9606] [187221] (610 PDB entries)
  8. 2284022Domain d5f89b2: 5f89 B:109-211 [327323]
    Other proteins in same PDB: d5f89b1, d5f89l1
    automated match to d2fb4l2

Details for d5f89b2

PDB Entry: 5f89 (more details), 2.78 Å

PDB Description: structure of the unliganded fab from hiv-1 neutralising antibody cap248-2b that binds to the gp120 c-terminus - gp41 interface
PDB Compounds: (B:) CAP248-2B Light Chain

SCOPe Domain Sequences for d5f89b2:

Sequence; same for both SEQRES and ATOM records: (download)

>d5f89b2 b.1.1.2 (B:109-211) automated matches {Human (Homo sapiens) [TaxId: 9606]}
qpkanptvtlfppsseelqankatlvclisdfypgavtvawkadsspvkagvetttpskq
snnkyaassylsltpeqwkshksyscqvthegstvektvapte

SCOPe Domain Coordinates for d5f89b2:

Click to download the PDB-style file with coordinates for d5f89b2.
(The format of our PDB-style files is described here.)

Timeline for d5f89b2:

  • d5f89b2 appears in periodic updates to SCOPe 2.06 starting on 2016-12-22

View in 3D
Domains from same chain:
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d5f89b1