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Lineage for d5f89b1 (5f89 B:2-108)

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2017115Fold b.1: Immunoglobulin-like beta-sandwich [48725] (33 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 2017116Superfamily b.1.1: Immunoglobulin [48726] (5 families) (S)
  5. 2026644Family b.1.1.0: automated matches [191470] (1 protein)
    not a true family
  6. 2026645Protein automated matches [190740] (27 species)
    not a true protein
  7. 2026747Species Human (Homo sapiens) [TaxId:9606] [187920] (847 PDB entries)
  8. 2284021Domain d5f89b1: 5f89 B:2-108 [327322]
    Other proteins in same PDB: d5f89b2, d5f89l2
    automated match to d2mcg11

Details for d5f89b1

PDB Entry: 5f89 (more details), 2.78 Å

PDB Description: structure of the unliganded fab from hiv-1 neutralising antibody cap248-2b that binds to the gp120 c-terminus - gp41 interface
PDB Compounds: (B:) CAP248-2B Light Chain

SCOPe Domain Sequences for d5f89b1:

Sequence; same for both SEQRES and ATOM records: (download)

>d5f89b1 b.1.1.0 (B:2-108) automated matches {Human (Homo sapiens) [TaxId: 9606]}
saltqpasvsgspgqsisisctgtssdiggykyvswyqqhpgrapkliiydvikrpsgis
drfsgsksantasltisglqagdeasyycssyttkktsffgpatrayvfgsgtqvtvlg

SCOPe Domain Coordinates for d5f89b1:

Click to download the PDB-style file with coordinates for d5f89b1.
(The format of our PDB-style files is described here.)

Timeline for d5f89b1:

  • d5f89b1 appears in periodic updates to SCOPe 2.06 starting on 2016-12-22

View in 3D
Domains from same chain:
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d5f89b2