SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for d5f9sa_ (5f9s A:)

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2130990Fold c.67: PLP-dependent transferase-like [53382] (3 superfamilies)
    main domain: 3 layers: a/b/a, mixed beta-sheet of 7 strands, order 3245671; strand 7 is antiparallel to the rest
  4. 2130991Superfamily c.67.1: PLP-dependent transferases [53383] (10 families) (S)
  5. 2131439Family c.67.1.3: Cystathionine synthase-like [53402] (17 protein domains)
  6. 2131631Protein automated matches [190399] (9 species)
    not a true protein
  7. 2131644Species Human (Homo sapiens) [TaxId:9606] [189951] (10 PDB entries)
  8. 2284012Domain d5f9sa_: 5f9s A: [327313]
    automated match to d4kyoc_
    complexed with plp

Details for d5f9sa_

PDB Entry: 5f9s (more details), 1.7 Å

PDB Description: crystal structure of human alanine:glyoxylate aminotransferase major allele (agt-ma) at 1.7 angstrom; internal aldimine with plp in the active site
PDB Compounds: (A:) Serine--pyruvate aminotransferase

SCOPe Domain Sequences for d5f9sa_:

Sequence; same for both SEQRES and ATOM records: (download)

>d5f9sa_ c.67.1.3 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}
llvtppkallkplsipnqlllgpgpsnlpprimaagglqmigsmskdmyqimdeikegiq
yvfqtrnpltlvisgsghcaleaalvnvlepgdsflvgangiwgqravdigerigarvhp
mtkdpgghytlqeveeglaqhkpvllflthgesstgvlqpldgfgelchrykclllvdsv
aslggtplymdrqgidilysgsqkalnappgtslisfsdkakkkmysrktkpfsfyldik
wlanfwgcddqprmyhhtipvislyslreslaliaeqglenswrqhreaaaylhgrlqal
glqlfvkdpalrlptvttvavpagydwrdivsyvidhfdieimgglgpstgkvlrigllg
cnatrenvdrvtealraalqhcpkk

SCOPe Domain Coordinates for d5f9sa_:

Click to download the PDB-style file with coordinates for d5f9sa_.
(The format of our PDB-style files is described here.)

Timeline for d5f9sa_:

  • d5f9sa_ appears in periodic updates to SCOPe 2.06 starting on 2016-12-22