SCOPe 2.06: Domain d5u4qb1: 5u4q B:1-333

Lineage for d5u4qb1 (5u4q B:1-333)

1. Root: SCOPe 2.06

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.2: NAD(P)-binding Rossmann-fold domains [51734] (1 superfamily)
   core: 3 layers, a/b/a; parallel beta-sheet of 6 strands, order 321456
   The nucleotide-binding modes of this and the next two folds/superfamilies are similar

4. Superfamily c.2.1: NAD(P)-binding Rossmann-fold domains [51735] (13 families)

5. Family c.2.1.0: automated matches [191313] (1 protein)
   not a true family

6. Protein automated matches [190069] (239 species)
   not a true protein

7. Species Klebsiella pneumoniae [TaxId:573] [225753] (3 PDB entries)

8. Domain d5u4qb1: 5u4q B:1-333 [327274]
   Other proteins in same PDB: d5u4qa2, d5u4qb2
   automated match to d4lisa_
   complexed with cl, nad

Details for d5u4qb1

PDB Entry: 5u4q, 1.5 Å

PDB Description: 1.5 angstrom resolution crystal structure of nad-dependent epimerase from klebsiella pneumoniae in complex with nad.

PDB Compounds: (B:) dtdp-glucose 4,6-dehydratase

SCOPe Domain Sequences for d5u4qb1:

Sequence, based on SEQRES records:

>d5u4qb1 c.2.1.0 (B:1-333) automated matches {Klebsiella pneumoniae [TaxId: 573]}
mkflvtgaagfigfhiaqrllneghnvvgidnmndyydvslkqarldrlaypafhfqqld
ladregmaklfateqfdrvihlaaqagvryslenpyayadanlmgylnilegcrhtkvkh
lvyassssvyglnrkmpfstedsvdhpvslyaatkkanelmahtyshlygipttglrfft
vygpwgrpdmalfkftkamlegksidvynygkmkrdftyiddiveavvrvldvipqanad
wtvesgspatssapyrvynignsspvelmdyitaleealgmeaqknmmpiqpgdvldtsa
dtqplydlvgfkpqtsvkdgvknfvdwykdyyq

Sequence, based on observed residues (ATOM records):

>d5u4qb1 c.2.1.0 (B:1-333) automated matches {Klebsiella pneumoniae [TaxId: 573]}
mkflvtgaagfigfhiaqrllneghnvvgidnmndyydvslkqarldrlaypafhfqqld
ladregmaklfateqfdrvihlaaqagvrlenpyayadanlmgylnilegcrhtkvkhlv
yassssvyglnrkmpfstedsvdhpvslyaatkkanelmahtyshlygipttglrfftvy
gpwgrpdmalfkftkamlegrdftyiddiveavvrvldvipqanadwtvesgspatssap
yrvynignsspvelmdyitaleealgmtsadtqplydlvgfkpqtsvkdgvknfvdwykd
yyq

Timeline for d5u4qb1:

• d5u4qb1 is new in SCOPe 2.06-stable
  
• d5u4qb1 appears in SCOPe 2.07
  
• d5u4qb1 appears in the current release, SCOPe 2.08