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Lineage for d5gpib_ (5gpi B:)

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2055629Fold b.47: Trypsin-like serine proteases [50493] (1 superfamily)
    barrel, closed; n=6, S=8; greek-key
    duplication: consists of two domains of the same fold
  4. 2055630Superfamily b.47.1: Trypsin-like serine proteases [50494] (5 families) (S)
  5. 2057706Family b.47.1.3: Viral proteases [50596] (5 protein domains)
    beta sheet in the first domain is opened rather than forms a barrel
  6. 2057796Protein automated matches [190658] (6 species)
    not a true protein
  7. 2283828Species Zika virus [TaxId:64320] [327129] (2 PDB entries)
  8. 2283869Domain d5gpib_: 5gpi B: [327170]
    Other proteins in same PDB: d5gpia_, d5gpic_, d5gpie_, d5gpig_
    automated match to d3e90b_

Details for d5gpib_

PDB Entry: 5gpi (more details), 1.58 Å

PDB Description: crystal structures of unlinked ns2b-ns3 protease from zika virus and its complex with a reverse peptide inhibitor
PDB Compounds: (B:) NS3 protease

SCOPe Domain Sequences for d5gpib_:

Sequence; same for both SEQRES and ATOM records: (download)

>d5gpib_ b.47.1.3 (B:) automated matches {Zika virus [TaxId: 64320]}
ettdgvyrvmtrrllgstqvgvgvmqegvfhtmwhvtkgaalrsgegrldpywgdvkqdl
vsycgpwkldaawdglsevqllavppgerakniqtlpgifktkdgdigavaldypagtsg
spildkcgrviglygngvvikngsyvsaitqgkr

SCOPe Domain Coordinates for d5gpib_:

Click to download the PDB-style file with coordinates for d5gpib_.
(The format of our PDB-style files is described here.)

Timeline for d5gpib_:

  • d5gpib_ appears in periodic updates to SCOPe 2.06 starting on 2016-12-15