SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Species: Aeromonas hydrophila [TaxId: 380703]

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2125386Fold c.56: Phosphorylase/hydrolase-like [53162] (8 superfamilies)
    core: 3 layers, a/b/a ; mixed sheet of 5 strands: order 21354; strand 4 is antiparallel to the rest; contains crossover loops
  4. 2125403Superfamily c.56.2: Purine and uridine phosphorylases [53167] (2 families) (S)
    complex architecture; contains mixed beta-sheet of 8 strands, order 23415867, strands 3, 6 & 7 are antiparallel to the rest; and barrel, closed; n=5, S=8
  5. 2126300Family c.56.2.0: automated matches [191488] (1 protein)
    not a true family
  6. 2126301Protein automated matches [190781] (41 species)
    not a true protein
  7. 2283803Species Aeromonas hydrophila [TaxId:380703] [327104] (4 PDB entries)

PDB entries in Species: Aeromonas hydrophila [TaxId: 380703]:

  1. Domain(s) for 5b7g:
    1. 2285552Domain d5b7ga_: 5b7g A: [328853]
      automated match to d4qeza_
      complexed with ade, gol
    2. 2285585Domain d5b7gb_: 5b7g B: [328886]
      automated match to d4qeza_
      complexed with ade, gol
  2. Domain(s) for 5b7n:
    1. 2284000Domain d5b7na_: 5b7n A: [327301]
      automated match to d4qeza_
      complexed with gol, sah
    2. 2284062Domain d5b7nb_: 5b7n B: [327363]
      automated match to d4qeza_
      complexed with gol, sah
  3. Domain(s) for 5b7p:
    1. 2283805Domain d5b7pa_: 5b7p A: [327106]
      automated match to d4qeza_
      complexed with mta
    2. 2283806Domain d5b7pb_: 5b7p B: [327107]
      automated match to d4qeza_
      complexed with mta
  4. Domain(s) for 5b7q:
    1. 2283810Domain d5b7qa_: 5b7q A: [327111]
      automated match to d4qeza_
      complexed with 5ad
    2. 2283841Domain d5b7qb_: 5b7q B: [327142]
      automated match to d4qeza_
      complexed with 5ad

More info for Species Aeromonas hydrophila [TaxId:380703] from c.56.2.0 automated matches

Timeline for Species Aeromonas hydrophila [TaxId:380703] from c.56.2.0 automated matches:

  • Species Aeromonas hydrophila [TaxId:380703] from c.56.2.0 automated matches appears in periodic updates to SCOPe 2.06 starting on 2016-12-15