SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Species: Escherichia coli [TaxId: 562]

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2078560Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. 2085156Superfamily c.1.10: Aldolase [51569] (9 families) (S)
    Common fold covers whole protein structure
  5. 2086002Family c.1.10.3: 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) [51594] (2 protein domains)
    hybrid of classes I and II aldolase
    automatically mapped to Pfam PF00490
  6. 2086040Protein automated matches [190088] (5 species)
    not a true protein
  7. 2283730Species Escherichia coli [TaxId:562] [327031] (1 PDB entry)

PDB entry in Species: Escherichia coli [TaxId: 562]:

More info for Species Escherichia coli [TaxId:562] from c.1.10.3 automated matches

Timeline for Species Escherichia coli [TaxId:562] from c.1.10.3 automated matches:

  • Species Escherichia coli [TaxId:562] from c.1.10.3 automated matches appears in periodic updates to SCOPe 2.06 starting on 2016-12-08