Lineage for d5j56a_ (5j56 A:)

  1. Root: SCOPe 2.06
  2. 2152203Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2207715Fold d.165: Ribosome inactivating proteins (RIP) [56370] (1 superfamily)
    contains mixed beta-sheet
  4. 2207716Superfamily d.165.1: Ribosome inactivating proteins (RIP) [56371] (3 families) (S)
  5. 2207717Family d.165.1.1: Plant cytotoxins [56372] (18 protein domains)
  6. 2207818Protein Ricin A-chain [56389] (1 species)
  7. 2207819Species Castor bean (Ricinus communis) [TaxId:3988] [56390] (47 PDB entries)
    Uniprot P06750 28-286
  8. 2283660Domain d5j56a_: 5j56 A: [326961]
    Other proteins in same PDB: d5j56b_
    automated match to d1br6a_
    complexed with acy, cl, edo, pg4

Details for d5j56a_

PDB Entry: 5j56 (more details), 1.8 Å

PDB Description: rta-v1c7
PDB Compounds: (A:) ricin

SCOPe Domain Sequences for d5j56a_:

Sequence, based on SEQRES records: (download)

>d5j56a_ d.165.1.1 (A:) Ricin A-chain {Castor bean (Ricinus communis) [TaxId: 3988]}
qypiinfttagatvqsytnfiravrgrlttgadvrheipvlpnrvglpinqrfilvelsn
haelsvtlaldvtnayvvgyragnsayffhpdnqedaeaithlftdvqnrytfafggnyd
rleqlagnlrenielgngpleeaisalyyystggtqlptlarsfiiciqmiseaarfqyi
egemrtrirynrrsapdpsvitlenswgrlstaiqesnqgafaspiqlqrrngskfsvyd
vsilipiialmvyrc

Sequence, based on observed residues (ATOM records): (download)

>d5j56a_ d.165.1.1 (A:) Ricin A-chain {Castor bean (Ricinus communis) [TaxId: 3988]}
qypiinfttagatvqsytnfiravrgrlttadvrheipvlpnrvglpinqrfilvelsnh
aelsvtlaldvtnayvvgyragnsayffhpdnqedaeaithlftdvqnrytfafggnydr
leqlagnlrenielgngpleeaisalyyystggtqlptlarsfiiciqmiseaarfqyie
gemrtrirynrrsapdpsvitlenswgrlstaiqesnqgafaspiqlqrrngskfsvydv
silipiialmvyrc

SCOPe Domain Coordinates for d5j56a_:

Click to download the PDB-style file with coordinates for d5j56a_.
(The format of our PDB-style files is described here.)

Timeline for d5j56a_:

  • d5j56a_ appears in periodic updates to SCOPe 2.06 starting on 2016-12-08