SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Species: Clostridium sp. [TaxId: 1506]

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2090218Fold c.2: NAD(P)-binding Rossmann-fold domains [51734] (1 superfamily)
    core: 3 layers, a/b/a; parallel beta-sheet of 6 strands, order 321456
    The nucleotide-binding modes of this and the next two folds/superfamilies are similar
  4. 2090219Superfamily c.2.1: NAD(P)-binding Rossmann-fold domains [51735] (13 families) (S)
  5. 2094257Family c.2.1.0: automated matches [191313] (1 protein)
    not a true family
  6. 2094258Protein automated matches [190069] (226 species)
    not a true protein
  7. 2283618Species Clostridium sp. [TaxId:1506] [326919] (2 PDB entries)

PDB entries in Species: Clostridium sp. [TaxId: 1506]:

  1. Domain(s) for 5g4k:
    1. 2283619Domain d5g4kb_: 5g4k B: [326920]
      automated match to d3i3of_
    2. 2283729Domain d5g4ka_: 5g4k A: [327030]
      automated match to d3i3of_
  2. Domain(s) for 5g4l:
    1. 2283624Domain d5g4la1: 5g4l A:1-264 [326925]
      Other proteins in same PDB: d5g4la2, d5g4lb2
      automated match to d3i3of_
      complexed with ndp
    2. 2283742Domain d5g4lb1: 5g4l B:1-264 [327043]
      Other proteins in same PDB: d5g4la2, d5g4lb2
      automated match to d3i3of_
      complexed with ndp

More info for Species Clostridium sp. [TaxId:1506] from c.2.1.0 automated matches

Timeline for Species Clostridium sp. [TaxId:1506] from c.2.1.0 automated matches:

  • Species Clostridium sp. [TaxId:1506] from c.2.1.0 automated matches appears in periodic updates to SCOPe 2.06 starting on 2016-12-07