SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Species: Arabidopsis thaliana [TaxId: 3702]

  1. Root: SCOPe 2.06
  2. 1976409Class a: All alpha proteins [46456] (289 folds)
  3. 1986516Fold a.22: Histone-fold [47112] (1 superfamily)
    core: 3 helices; long middle helix is flanked at each end with shorter ones
  4. 1986517Superfamily a.22.1: Histone-fold [47113] (5 families) (S)
  5. 1987129Family a.22.1.3: TBP-associated factors, TAFs [47134] (14 protein domains)
  6. 1987187Protein automated matches [194413] (3 species)
    not a true protein
  7. 2283597Species Arabidopsis thaliana [TaxId:3702] [326898] (1 PDB entry)

PDB entry in Species: Arabidopsis thaliana [TaxId: 3702]:

More info for Species Arabidopsis thaliana [TaxId:3702] from a.22.1.3 automated matches

Timeline for Species Arabidopsis thaliana [TaxId:3702] from a.22.1.3 automated matches:

  • Species Arabidopsis thaliana [TaxId:3702] from a.22.1.3 automated matches appears in periodic updates to SCOPe 2.06 starting on 2016-12-07