SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Species: Lactobacillus plantarum [TaxId: 220668]

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2139769Fold c.79: Tryptophan synthase beta subunit-like PLP-dependent enzymes [53685] (1 superfamily)
    consists of two similar domains related by pseudo dyad; duplication
    core: 3 layers, a/b/a; parallel beta-sheet of 4 strands, order 3214
  4. 2139770Superfamily c.79.1: Tryptophan synthase beta subunit-like PLP-dependent enzymes [53686] (2 families) (S)
  5. 2140083Family c.79.1.0: automated matches [191338] (1 protein)
    not a true family
  6. 2140084Protein automated matches [190215] (32 species)
    not a true protein
  7. 2283544Species Lactobacillus plantarum [TaxId:220668] [326845] (1 PDB entry)

PDB entry in Species: Lactobacillus plantarum [TaxId: 220668]:

More info for Species Lactobacillus plantarum [TaxId:220668] from c.79.1.0 automated matches

Timeline for Species Lactobacillus plantarum [TaxId:220668] from c.79.1.0 automated matches:

  • Species Lactobacillus plantarum [TaxId:220668] from c.79.1.0 automated matches appears in periodic updates to SCOPe 2.06 starting on 2016-12-07