SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for d5trjb_ (5trj B:)

  1. Root: SCOPe 2.06
  2. 2217451Class e: Multi-domain proteins (alpha and beta) [56572] (69 folds)
  3. 2220074Fold e.8: DNA/RNA polymerases [56671] (1 superfamily)
    divided into morphological domains including "palm", "thumb" and "fingers"; the catalytic "palm" domain is conserved to all members
  4. 2220075Superfamily e.8.1: DNA/RNA polymerases [56672] (7 families) (S)
    "palm" domain has a ferredoxin-like fold, related to that of an adenylyl cyclase domain
  5. 2220913Family e.8.1.4: RNA-dependent RNA-polymerase [56694] (3 protein domains)
  6. 2221226Protein automated matches [190260] (28 species)
    not a true protein
  7. 2221298Species Hepatitis C virus [TaxId:11103] [187048] (44 PDB entries)
  8. 2283496Domain d5trjb_: 5trj B: [326797]
    automated match to d3q0za_
    protein/RNA complex; complexed with 23e, 7ho, so4

Details for d5trjb_

PDB Entry: 5trj (more details), 2.57 Å

PDB Description: crystal structure of the hepatitis c virus ns5b rna-dependent rna polymerase in complex with 2-{[2-(carboxymethoxy)benzene-1- carbonyl]amino}-3-[(4-chlorophenyl)methoxy]benzoic acid
PDB Compounds: (B:) RNA-dependent RNA polymerase

SCOPe Domain Sequences for d5trjb_:

Sequence, based on SEQRES records: (download)

>d5trjb_ e.8.1.4 (B:) automated matches {Hepatitis C virus [TaxId: 11103]}
smsytwtgalitpcaaeetklpinalsnsllrhhnlvyattsrsaslrqkkvtfdrlqvl
ddhyrdvlkemkakastvkakllsveeackltpphsarskfgygakdvrnlsskavnhir
svwkdlledtetpidttimaknevfcvqpekggrkparlivfpdlgvrvcekmalydvvs
tlpqavmgssygfqyspgqrveflvnawkakkcpmgfaydtrcfdstvtendirveesiy
qccdlapearqairslterlyiggpltnskgqncgyrrcrasgvlttscgntltcylkaa
aacraaklqdctmlvcgddlvvicesagtqedeaslrafteamtrysappgdppkpeydl
elitscssnvsvahdasgkrvyyltrdpttplaraawetarhtpvnswlgniimyaptlw
armilmthffsillaqeqlekaldcqiygacysiepldlpqiiqrlhglsafslhsyspg
einrvasclrklgvpplrvwrhrarsvrarllsqggraatcgkylfnwavrtklkltpip
aasqldlsswfvagysggdiyhslsra

Sequence, based on observed residues (ATOM records): (download)

>d5trjb_ e.8.1.4 (B:) automated matches {Hepatitis C virus [TaxId: 11103]}
smsytwtgalitpcvyattsrsaslrqkkvtfdrlqvlddhyrdvlkemkakastvkakl
lsveeackltpphsarskfgygakdvrnlsskavnhirsvwkdlledtetpidttimakn
evfcvekggrkparlivfpdlgvrvcekmalydvvstlpqavmgssygfqyspgqrvefl
vnawkakkcpmgfaydtrcfdstvtendirveesiyqccdlapearqairslterlyigg
pltnskgqncgyrrcrasgvlttscgntltcylkaaaacraaklqdctmlvcgddlvvic
esagtqedeaslrafteamtrysappgdppkpeydlelitscssnvsvahdasgkrvyyl
trdpttplaraawetarhtpvnswlgniimyaptlwarmilmthffsillaqeqlekald
cqiygacysiepldlpqiiqrlhglsafslhsyspgeinrvasclrklgvpplrvwrhra
rsvrarllsqggraatcgkylfnwavrtklkltpipaasqldlsswfvagysggdiyhsl
sra

SCOPe Domain Coordinates for d5trjb_:

Click to download the PDB-style file with coordinates for d5trjb_.
(The format of our PDB-style files is described here.)

Timeline for d5trjb_:

  • d5trjb_ appears in periodic updates to SCOPe 2.06 starting on 2016-12-01