Lineage for d5jf6a_ (5jf6 A:)

  1. Root: SCOPe 2.06
  2. 2152203Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2208465Fold d.167: Peptide deformylase [56419] (1 superfamily)
    alpha-beta(5)-alpha; 3 layers: a/b/a; meander beta-sheet wraps around the C-terminal alpha-helix
  4. 2208466Superfamily d.167.1: Peptide deformylase [56420] (2 families) (S)
    nickel-dependent enzyme
  5. 2208467Family d.167.1.1: Peptide deformylase [56421] (2 protein domains)
    automatically mapped to Pfam PF01327
  6. 2208586Protein automated matches [190200] (9 species)
    not a true protein
  7. 2283335Species Streptococcus agalactiae [TaxId:1311] [326636] (10 PDB entries)
  8. 2283368Domain d5jf6a_: 5jf6 A: [326669]
    automated match to d3l87a_
    complexed with act, bb4, zn

Details for d5jf6a_

PDB Entry: 5jf6 (more details), 1.7 Å

PDB Description: crystal structure of type 2 pdf from streptococcus agalactiae in complex with inhibitor 6b (ab47)
PDB Compounds: (A:) Peptide deformylase

SCOPe Domain Sequences for d5jf6a_:

Sequence; same for both SEQRES and ATOM records: (download)

>d5jf6a_ d.167.1.1 (A:) automated matches {Streptococcus agalactiae [TaxId: 1311]}
aaidklvkashlidmndiiregnptlrkvaeevtfplsekeeilgekmmqflkhsqdpim
aeklglrggvglaapqldiskriiavlvpnvedaqgnppkeayslqevmynpkvvshsvq
daalsdgegclsvdrevpgyvvrharvtieyfdktgekhrlklkgynsivvqheidhidg
imfydrineknpfavkegllile

SCOPe Domain Coordinates for d5jf6a_:

Click to download the PDB-style file with coordinates for d5jf6a_.
(The format of our PDB-style files is described here.)

Timeline for d5jf6a_:

  • d5jf6a_ appears in periodic updates to SCOPe 2.06 starting on 2016-11-30