SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for d5iwda1 (5iwd A:3-135)

  1. Root: SCOPe 2.06
  2. 2152203Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2193533Fold d.131: DNA clamp [55978] (1 superfamily)
    contains two helices and two beta sheets
    duplication: fold has internal pseudo two-fold symmetry
  4. 2193534Superfamily d.131.1: DNA clamp [55979] (3 families) (S)
  5. 2193719Family d.131.1.2: DNA polymerase processivity factor [55983] (5 protein domains)
    duplication: consists of two domains of this fold
  6. 2193861Protein UL44 [111176] (2 species)
  7. 2283337Species Human cytomegalovirus (strain ad169) [TaxId:10360] [326638] (2 PDB entries)
  8. 2283354Domain d5iwda1: 5iwd A:3-135 [326655]
    automated match to d1yypa1
    protein/DNA complex; complexed with 6ev

Details for d5iwda1

PDB Entry: 5iwd (more details), 2.56 Å

PDB Description: hcmv dna polymerase subunit ul44 complex with a small molecule
PDB Compounds: (A:) DNA polymerase processivity factor

SCOPe Domain Sequences for d5iwda1:

Sequence; same for both SEQRES and ATOM records: (download)

>d5iwda1 d.131.1.2 (A:3-135) UL44 {Human cytomegalovirus (strain ad169) [TaxId: 10360]}
rkdrlsepptlalrlkpyktaiqqlrsviralkenttvtflptpslilqtvrshcvskit
fnssclyitdksfqpktinnstpllgnfmyltsskdltkfyvqdisdlsakismcapdfn
mefssacvhgqdi

SCOPe Domain Coordinates for d5iwda1:

Click to download the PDB-style file with coordinates for d5iwda1.
(The format of our PDB-style files is described here.)

Timeline for d5iwda1:

  • d5iwda1 appears in periodic updates to SCOPe 2.06 starting on 2016-11-30

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d5iwda2