SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for d5gpkb_ (5gpk B:)

  1. Root: SCOPe 2.06
  2. 2152203Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2216056Fold d.305: NAP-like [143112] (1 superfamily)
    core: central meander 4-stranded beta-sheet (order: 1234) transversed by a C-terminal helix
  4. 2216057Superfamily d.305.1: NAP-like [143113] (2 families) (S)
  5. 2216070Family d.305.1.0: automated matches [196445] (1 protein)
    not a true family
  6. 2216071Protein automated matches [196446] (3 species)
    not a true protein
  7. 2283318Species Schizosaccharomyces pombe [TaxId:284812] [326619] (2 PDB entries)
  8. 2283351Domain d5gpkb_: 5gpk B: [326652]
    automated match to d2e50b_
    mutant

Details for d5gpkb_

PDB Entry: 5gpk (more details), 2.1 Å

PDB Description: crystal structure of ccp1 mutant
PDB Compounds: (B:) Putative nucleosome assembly protein C36B7.08c

SCOPe Domain Sequences for d5gpkb_:

Sequence; same for both SEQRES and ATOM records: (download)

>d5gpkb_ d.305.1.0 (B:) automated matches {Schizosaccharomyces pombe [TaxId: 284812]}
meaaqafenlanleqefgkaeieilkkqnelfqplfeqrrdilktinnfwvvvleaagde
isqyitpedsvllekleniyverfnekeprdvrisltfqpneylqddnltlvkevrmkee
kakddeglekkitkytsqpvdihwkpgksmfrknkklppnffdyfqwtgeeedddfdgat
ltiflaedlfpnavkyfteamteeasd

SCOPe Domain Coordinates for d5gpkb_:

Click to download the PDB-style file with coordinates for d5gpkb_.
(The format of our PDB-style files is described here.)

Timeline for d5gpkb_:

  • d5gpkb_ appears in periodic updates to SCOPe 2.06 starting on 2016-11-30

View in 3D
Domains from other chains:
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d5gpka_