SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Species: Human cytomegalovirus (strain ad169) [TaxId: 10360]

  1. Root: SCOPe 2.06
  2. 2152203Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2193533Fold d.131: DNA clamp [55978] (1 superfamily)
    contains two helices and two beta sheets
    duplication: fold has internal pseudo two-fold symmetry
  4. 2193534Superfamily d.131.1: DNA clamp [55979] (3 families) (S)
  5. 2193719Family d.131.1.2: DNA polymerase processivity factor [55983] (5 protein domains)
    duplication: consists of two domains of this fold
  6. 2193861Protein UL44 [111176] (2 species)
  7. 2283337Species Human cytomegalovirus (strain ad169) [TaxId:10360] [326638] (2 PDB entries)

PDB entries in Species: Human cytomegalovirus (strain ad169) [TaxId: 10360]:

  1. Domain(s) for 5iwd:
    1. 2283354Domain d5iwda1: 5iwd A:3-135 [326655]
      automated match to d1yypa1
      protein/DNA complex; complexed with 6ev
    2. 2283355Domain d5iwda2: 5iwd A:136-276 [326656]
      automated match to d1yypa2
      protein/DNA complex; complexed with 6ev
  2. Domain(s) for 5ixa:
    1. 2283338Domain d5ixab1: 5ixa B:8-135 [326639]
      automated match to d1t6la1
    2. 2283339Domain d5ixab2: 5ixa B:136-272 [326640]
      automated match to d1t6la2
    3. 2283345Domain d5ixaa1: 5ixa A:8-135 [326646]
      automated match to d1t6la1
    4. 2283346Domain d5ixaa2: 5ixa A:136-270 [326647]
      automated match to d1t6la2

More info for Species Human cytomegalovirus (strain ad169) [TaxId:10360] from d.131.1.2 UL44

Timeline for Species Human cytomegalovirus (strain ad169) [TaxId:10360] from d.131.1.2 UL44:

  • Species Human cytomegalovirus (strain ad169) [TaxId:10360] from d.131.1.2 UL44 appears in periodic updates to SCOPe 2.06 starting on 2016-11-30