SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Species: Streptococcus agalactiae [TaxId: 1311]

  1. Root: SCOPe 2.06
  2. 2152203Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2208465Fold d.167: Peptide deformylase [56419] (1 superfamily)
    alpha-beta(5)-alpha; 3 layers: a/b/a; meander beta-sheet wraps around the C-terminal alpha-helix
  4. 2208466Superfamily d.167.1: Peptide deformylase [56420] (2 families) (S)
    nickel-dependent enzyme
  5. 2208467Family d.167.1.1: Peptide deformylase [56421] (2 protein domains)
    automatically mapped to Pfam PF01327
  6. 2208586Protein automated matches [190200] (9 species)
    not a true protein
  7. 2283335Species Streptococcus agalactiae [TaxId:1311] [326636] (10 PDB entries)

PDB entries in Species: Streptococcus agalactiae [TaxId: 1311]:

  1. Domain(s) for 5jex:
  2. Domain(s) for 5jey:
  3. Domain(s) for 5jf1:
  4. Domain(s) for 5jf2:
  5. Domain(s) for 5jf3:
  6. Domain(s) for 5jf4:
  7. Domain(s) for 5jf5:
  8. Domain(s) for 5jf6:
  9. Domain(s) for 5jf7:
  10. Domain(s) for 5jf8:

More info for Species Streptococcus agalactiae [TaxId:1311] from d.167.1.1 automated matches

Timeline for Species Streptococcus agalactiae [TaxId:1311] from d.167.1.1 automated matches:

  • Species Streptococcus agalactiae [TaxId:1311] from d.167.1.1 automated matches appears in periodic updates to SCOPe 2.06 starting on 2016-11-30