Lineage for d5tmcf3 (5tmc F:319-423)

  1. Root: SCOPe 2.06
  2. 1976409Class a: All alpha proteins [46456] (289 folds)
  3. 1981147Fold a.4: DNA/RNA-binding 3-helical bundle [46688] (14 superfamilies)
    core: 3-helices; bundle, closed or partly opened, right-handed twist; up-and down
  4. 1984585Superfamily a.4.13: Sigma3 and sigma4 domains of RNA polymerase sigma factors [88659] (4 families) (S)
  5. 1984618Family a.4.13.2: Sigma4 domain [88665] (5 protein domains)
  6. 1984626Protein Sigma70 (SigA, RpoD) [88666] (4 species)
    Pfam PF03979
  7. 1984640Species Thermus thermophilus [TaxId:274] [88667] (10 PDB entries)
    Uniprot Q9WX78
  8. 2283289Domain d5tmcf3: 5tmc F:319-423 [326590]
    Other proteins in same PDB: d5tmca1, d5tmca2, d5tmcb1, d5tmcb2, d5tmcc_, d5tmcd_, d5tmce_, d5tmcf1, d5tmcf2
    automated match to d1smyf2
    complexed with g4p, mg, po4, zn

Details for d5tmcf3

PDB Entry: 5tmc (more details), 2.71 Å

PDB Description: re-refinement of thermus thermopiles dna-directed rna polymerase structure
PDB Compounds: (F:) RNA polymerase sigma factor SigA

SCOPe Domain Sequences for d5tmcf3:

Sequence; same for both SEQRES and ATOM records: (download)

>d5tmcf3 a.4.13.2 (F:319-423) Sigma70 (SigA, RpoD) {Thermus thermophilus [TaxId: 274]}
tpigdekdsfygdfipdehlpspvdaatqsllseelekalsklsereamvlklrkglidg
rehtleevgaffgvtrerirqienkalrklkyhesrtrklrdfld

SCOPe Domain Coordinates for d5tmcf3:

Click to download the PDB-style file with coordinates for d5tmcf3.
(The format of our PDB-style files is described here.)

Timeline for d5tmcf3:

  • d5tmcf3 appears in periodic updates to SCOPe 2.06 starting on 2016-11-24