SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for d5hs2b_ (5hs2 B:)

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2133075Fold c.68: Nucleotide-diphospho-sugar transferases [53447] (1 superfamily)
    3 layers: a/b/a; mixed beta-sheet of 7 strands, order 3214657; strand 6 is antiparallel to the rest
  4. 2133076Superfamily c.68.1: Nucleotide-diphospho-sugar transferases [53448] (20 families) (S)
  5. 2133953Family c.68.1.0: automated matches [191551] (1 protein)
    not a true family
  6. 2133954Protein automated matches [190951] (26 species)
    not a true protein
  7. 2278577Species Bacillus subtilis [TaxId:224308] [321878] (3 PDB entries)
  8. 2283252Domain d5hs2b_: 5hs2 B: [326553]
    automated match to d4naka_
    complexed with ctp, mg

Details for d5hs2b_

PDB Entry: 5hs2 (more details), 1.9 Å

PDB Description: crystal structure of ispd complexed with ctp and mg2+ from bacillus subtilis at 1.90 angstroms resolution
PDB Compounds: (B:) 2-c-methyl-d-erythritol 4-phosphate cytidylyltransferase

SCOPe Domain Sequences for d5hs2b_:

Sequence, based on SEQRES records: (download)

>d5hs2b_ c.68.1.0 (B:) automated matches {Bacillus subtilis [TaxId: 224308]}
msydvvipaagqgkrmkagrnklfielkgdpviihtlrvfdshrqcdkiilvineqereh
fqqllsdypfqtsielvaggderqhsvykglkavkqekivlvhdgarpfikheqidelia
eaeqtgaailavpvkdtikrvqdlqvsetiersslwavqtpqafrlsllmkahaeaerkg
flgtddaslveqmeggsvrvvegsytniklttpddltsaeaimese

Sequence, based on observed residues (ATOM records): (download)

>d5hs2b_ c.68.1.0 (B:) automated matches {Bacillus subtilis [TaxId: 224308]}
msydvvipanklfielkgdpviihtlrvfdshrqcdkiilvineqerehfqqllsdypfq
tsielvaggderqhsvykglkavkqekivlvhdgarpfikheqideliaeaeqtgaaila
vpvkdtikrvqdlqvsetiersslwavqtpqafrlsllmkahaeaerkgflgtddaslve
qmeggsvrvvegsytniklttpddltsaeaimese

SCOPe Domain Coordinates for d5hs2b_:

Click to download the PDB-style file with coordinates for d5hs2b_.
(The format of our PDB-style files is described here.)

Timeline for d5hs2b_:

  • d5hs2b_ appears in periodic updates to SCOPe 2.06 starting on 2016-11-24