SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for d5epub_ (5epu B:)

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2125386Fold c.56: Phosphorylase/hydrolase-like [53162] (8 superfamilies)
    core: 3 layers, a/b/a ; mixed sheet of 5 strands: order 21354; strand 4 is antiparallel to the rest; contains crossover loops
  4. 2125403Superfamily c.56.2: Purine and uridine phosphorylases [53167] (2 families) (S)
    complex architecture; contains mixed beta-sheet of 8 strands, order 23415867, strands 3, 6 & 7 are antiparallel to the rest; and barrel, closed; n=5, S=8
  5. 2125404Family c.56.2.1: Purine and uridine phosphorylases [53168] (7 protein domains)
  6. 2125805Protein Uridine phosphorylase [53176] (6 species)
  7. 2126047Species Vibrio cholerae [TaxId:243277] [224899] (11 PDB entries)
  8. 2283149Domain d5epub_: 5epu B: [326450]
    automated match to d5efob_
    complexed with cl, cyt, edo, gol, mg, na, trs

Details for d5epub_

PDB Entry: 5epu (more details), 1.06 Å

PDB Description: x-ray structure uridine phosphorylase from vibrio cholerae in complex with cytosine at 1.06a.
PDB Compounds: (B:) Uridine phosphorylase

SCOPe Domain Sequences for d5epub_:

Sequence; same for both SEQRES and ATOM records: (download)

>d5epub_ c.56.2.1 (B:) Uridine phosphorylase {Vibrio cholerae [TaxId: 243277]}
tktvfhlgvteadlngatlaiipgdparvqkiaelmdnpvflashreytvyraeldgqsv
vvcstgiggpstsiaveelaqlgvrtflrvgttgaiqphvnvgdmivttgsvrldgaslh
fapmefpavpdfdvatamkaaaqesgatvhmgvtassdtfypgqerydtftgrvvrrfqg
smkewqdmgvlnfemesatlltmcassglkagcvagviinrtqkeipdhatlketearsi
kvvveaarkmlk

SCOPe Domain Coordinates for d5epub_:

Click to download the PDB-style file with coordinates for d5epub_.
(The format of our PDB-style files is described here.)

Timeline for d5epub_:

  • d5epub_ appears in periodic updates to SCOPe 2.06 starting on 2016-11-23