SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for d5elnd1 (5eln D:46-189)

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2049950Fold b.40: OB-fold [50198] (16 superfamilies)
    barrel, closed or partly opened n=5, S=10 or S=8; greek-key
  4. 2051128Superfamily b.40.4: Nucleic acid-binding proteins [50249] (17 families) (S)
  5. 2052191Family b.40.4.0: automated matches [191416] (1 protein)
    not a true family
  6. 2052192Protein automated matches [190576] (29 species)
    not a true protein
  7. 2282892Species Cryptosporidium parvum [TaxId:353152] [326193] (2 PDB entries)
  8. 2283056Domain d5elnd1: 5eln D:46-189 [326357]
    Other proteins in same PDB: d5elna2, d5elna3, d5elnb2, d5elnb3, d5elnc2, d5elnc3, d5elnd2, d5elnd3
    automated match to d3bjud1
    protein/RNA complex; complexed with edo, gol, lys

Details for d5elnd1

PDB Entry: 5eln (more details), 1.9 Å

PDB Description: crystal structure of lysyl-trna synthetase from cryptosporidium parvum complexed with l-lysine
PDB Compounds: (D:) Lysine--tRNA ligase

SCOPe Domain Sequences for d5elnd1:

Sequence; same for both SEQRES and ATOM records: (download)

>d5elnd1 b.40.4.0 (D:46-189) automated matches {Cryptosporidium parvum [TaxId: 353152]}
hytdnrykmmecikdagrpfyphkfkismslpayalkygnvengyidkdttlslsgrvts
irssssklifydifceeqkvqiianimehdistgefsvshseirrgdvvgftgfpgkskr
gelslfsksvvllspcyhmlptai

SCOPe Domain Coordinates for d5elnd1:

Click to download the PDB-style file with coordinates for d5elnd1.
(The format of our PDB-style files is described here.)

Timeline for d5elnd1:

  • d5elnd1 appears in periodic updates to SCOPe 2.06 starting on 2016-11-17