SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for d5tvgc_ (5tvg C:)

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2142044Fold c.87: UDP-Glycosyltransferase/glycogen phosphorylase [53755] (1 superfamily)
    consists of two non-similar domains with 3 layers (a/b/a) each
    domain 1: parallel beta-sheet of 7 strands, order 3214567
    domain 2: parallel beta-sheet of 6 strands, order 321456
  4. 2142045Superfamily c.87.1: UDP-Glycosyltransferase/glycogen phosphorylase [53756] (14 families) (S)
  5. 2142537Family c.87.1.0: automated matches [191559] (1 protein)
    not a true family
  6. 2142538Protein automated matches [190965] (23 species)
    not a true protein
  7. 2283015Species Burkholderia vietnamiensis [TaxId:269482] [326316] (1 PDB entry)
  8. 2283054Domain d5tvgc_: 5tvg C: [326355]
    Other proteins in same PDB: d5tvga2, d5tvgb2, d5tvgd2
    automated match to d5hxaa_
    complexed with gol, mg, udp

Details for d5tvgc_

PDB Entry: 5tvg (more details), 2.3 Å

PDB Description: crystal structure of an alpha,alpha-trehalose-phosphate synthase (udp- forming) from burkholderia vietnamiensis
PDB Compounds: (C:) Alpha,alpha-trehalose-phosphate synthase (UDP-forming)

SCOPe Domain Sequences for d5tvgc_:

Sequence, based on SEQRES records: (download)

>d5tvgc_ c.87.1.0 (C:) automated matches {Burkholderia vietnamiensis [TaxId: 269482]}
msrlivvsnrvaagedtrpsagglavgvmdalkqtggvwfgwngeivgtpdaapavrrdg
nvtyatlgltrrdydqyyrgfsnatlwpvfhyrsdlarfdrqeyagylrvnamlarqlaa
llrpddliwvhdyhllpfahclrelgvknpigfflhipfpspdmlrvvpphdelvkfmca
ydiagfqtdadkrafsdyierrgigtasddgmlhahgrvvkvaaypigvypdaiaeaavq
yggrkpvkmlrdalggrklvmsvdrldyskglverfqsfermlagapdwqgrvsfvqiap
ptrsdvqtyqriretlereagringrfaqldwtpiqylnrkyernllmaffrmsqvgyvt
plrdgmnlvakeyvasqdpadpgvlvlsefagaaaelggallvnpydhaqmadalarala
mplaerqarheenlaqlrnndlsvwrdtfvadlrsvaaaasvtqragr

Sequence, based on observed residues (ATOM records): (download)

>d5tvgc_ c.87.1.0 (C:) automated matches {Burkholderia vietnamiensis [TaxId: 269482]}
msrlivvsnrvapsagglavgvmdalkqtggvwfgwngeivgtpdaapavrrdgnvtyat
lgltrrdydqyyrgfsnatlwpvfhyrsdlarfdrqeyagylrvnamlarqlaallrpdd
liwvhdyhllpfahclrelgvknpigfflhipfpspdmlrvvpphdelvkfmcaydiagf
qtdadkrafsdyierrgigtgmlhahgrvvkvaaypigvypdaiaeaavqyggrkpvkml
rdalggrklvmsvdrldyskglverfqsfermlagapdwqgrvsfvqiapptrsdvqtyq
riretlereagringrfaqldwtpiqylnrkyernllmaffrmsqvgyvtplrdgmnlva
keyvasqdpadpgvlvlsefagaaaelggallvnpydhaqmadalaralamplaerqarh
eenlaqlrnndlsvwrdtfvadlrsvaaaasvtqragr

SCOPe Domain Coordinates for d5tvgc_:

Click to download the PDB-style file with coordinates for d5tvgc_.
(The format of our PDB-style files is described here.)

Timeline for d5tvgc_:

  • d5tvgc_ appears in periodic updates to SCOPe 2.06 starting on 2016-11-17