SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for d5tvgh_ (5tvg H:)

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2142044Fold c.87: UDP-Glycosyltransferase/glycogen phosphorylase [53755] (1 superfamily)
    consists of two non-similar domains with 3 layers (a/b/a) each
    domain 1: parallel beta-sheet of 7 strands, order 3214567
    domain 2: parallel beta-sheet of 6 strands, order 321456
  4. 2142045Superfamily c.87.1: UDP-Glycosyltransferase/glycogen phosphorylase [53756] (14 families) (S)
  5. 2142537Family c.87.1.0: automated matches [191559] (1 protein)
    not a true family
  6. 2142538Protein automated matches [190965] (23 species)
    not a true protein
  7. 2283015Species Burkholderia vietnamiensis [TaxId:269482] [326316] (1 PDB entry)
  8. 2283024Domain d5tvgh_: 5tvg H: [326325]
    Other proteins in same PDB: d5tvga2, d5tvgb2, d5tvgd2
    automated match to d5hxaa_
    complexed with gol, mg, udp

Details for d5tvgh_

PDB Entry: 5tvg (more details), 2.3 Å

PDB Description: crystal structure of an alpha,alpha-trehalose-phosphate synthase (udp- forming) from burkholderia vietnamiensis
PDB Compounds: (H:) Alpha,alpha-trehalose-phosphate synthase (UDP-forming)

SCOPe Domain Sequences for d5tvgh_:

Sequence, based on SEQRES records: (download)

>d5tvgh_ c.87.1.0 (H:) automated matches {Burkholderia vietnamiensis [TaxId: 269482]}
srlivvsnrvaagedtrpsagglavgvmdalkqtggvwfgwngeivgtpdaapavrrdgn
vtyatlgltrrdydqyyrgfsnatlwpvfhyrsdlarfdrqeyagylrvnamlarqlaal
lrpddliwvhdyhllpfahclrelgvknpigfflhipfpspdmlrvvpphdelvkfmcay
diagfqtdadkrafsdyierrgigtasddgmlhahgrvvkvaaypigvypdaiaeaavqy
ggrkpvkmlrdalggrklvmsvdrldyskglverfqsfermlagapdwqgrvsfvqiapp
trsdvqtyqriretlereagringrfaqldwtpiqylnrkyernllmaffrmsqvgyvtp
lrdgmnlvakeyvasqdpadpgvlvlsefagaaaelggallvnpydhaqmadalaralam
plaerqarheenlaqlrnndlsvwrdtfvadlrsvaa

Sequence, based on observed residues (ATOM records): (download)

>d5tvgh_ c.87.1.0 (H:) automated matches {Burkholderia vietnamiensis [TaxId: 269482]}
srlivvsnlavgvmdalkqtggvwfgwngeivgtpdaapavrrdgnvtyatlgltrrdyd
qyyrgfsnatlwpvfhyrsdlarfdrqeyagylrvnamlarqlaallrpddliwvhdyhl
lpfahclrelgvknpigfflhipfpspdmlrvvpphdelvkfmcaydiagfqtdadkraf
sdyierrgigtasddgmlhahgrvvkvaaypigvypdaiaeaavqyggrkpvkmlrdalg
grklvmsvdrldyskglverfqsfermlagapdwqgrvsfvqiapptrsdvqtyqriret
lereagringrfaqldwtpiqylnrkyernllmaffrmsqvgyvtplrdgmnlvakeyva
sqdpadpgvlvlsefagaaaelggallvnpydhaqmadalaralamplaerqarheenla
qlrnndlsvwrdtfvadlrsvaa

SCOPe Domain Coordinates for d5tvgh_:

Click to download the PDB-style file with coordinates for d5tvgh_.
(The format of our PDB-style files is described here.)

Timeline for d5tvgh_:

  • d5tvgh_ appears in periodic updates to SCOPe 2.06 starting on 2016-11-17