SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for d5heka_ (5hek A:)

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2129295Fold c.66: S-adenosyl-L-methionine-dependent methyltransferases [53334] (1 superfamily)
    core: 3 layers, a/b/a; mixed beta-sheet of 7 strands, order 3214576; strand 7 is antiparallel to the rest
  4. 2129296Superfamily c.66.1: S-adenosyl-L-methionine-dependent methyltransferases [53335] (60 families) (S)
  5. 2130608Family c.66.1.0: automated matches [191451] (1 protein)
    not a true family
  6. 2130609Protein automated matches [190689] (61 species)
    not a true protein
  7. 2130724Species Helicobacter pylori [TaxId:85962] [225261] (4 PDB entries)
  8. 2282980Domain d5heka_: 5hek A: [326281]
    automated match to d1g60a_

Details for d5heka_

PDB Entry: 5hek (more details), 3 Å

PDB Description: crystal structure of m1.hpyavi
PDB Compounds: (A:) Adenine specific DNA methyltransferase (DpnA)

SCOPe Domain Sequences for d5heka_:

Sequence, based on SEQRES records: (download)

>d5heka_ c.66.1.0 (A:) automated matches {Helicobacter pylori [TaxId: 85962]}
miqiyhadafeiikdfyqqnlkvdaiitdppynisvknnfptlksakrqgidfgewdknf
kllewiaryaplvnpngcmvifcsyrfisyiadfleengfvvkdfiqwvknnpmprnihr
ryvqdtefalwavkkkakwvfnkpknekylrplilkspvvsglektkhptqkslalmeki
isihtnpndivldpfmgsgttglacknlernfigiesekeyfqtakkrlnlf

Sequence, based on observed residues (ATOM records): (download)

>d5heka_ c.66.1.0 (A:) automated matches {Helicobacter pylori [TaxId: 85962]}
miqiyhadafeiikdfyqqnlkvdaiitdppynknfkllewiaryaplvnpngcmvifcs
yrfisyiadfleengfvvkdfiqwvknnpmprnihrryvqdtefalwavkkkakwvfnkp
knekylrplilkspvqkslalmekiisihtnpndivldpfmgsgttglacknlernfigi
esekeyfqtakkrlnlf

SCOPe Domain Coordinates for d5heka_:

Click to download the PDB-style file with coordinates for d5heka_.
(The format of our PDB-style files is described here.)

Timeline for d5heka_:

  • d5heka_ appears in periodic updates to SCOPe 2.06 starting on 2016-11-17